Factsheet for Solyc03g098590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026380	Potato	nucleus	80.76	77.0
KRH09399	Soybean	nucleus	44.72	44.72
KRH38895	Soybean	nucleus	44.99	44.15
VIT_17s0053g00320.t01	Wine grape	plastid	43.9	43.9
Solyc04g009170.1.1	Tomato	nucleus	33.6	40.13
Solyc01g009000.2.1	Tomato	plastid	25.47	29.56
Solyc06g005650.2.1	Tomato	extracellular	14.36	26.5
Solyc11g012950.1.1	Tomato	cytosol	21.68	24.02
Solyc01g104260.2.1	Tomato	mitochondrion	19.51	24.0
Solyc08g075910.1.1	Tomato	nucleus	19.51	23.92
Solyc01g050040.2.1	Tomato	nucleus	17.62	22.26
Solyc04g011610.1.1	Tomato	nucleus	23.58	22.03
Solyc09g074460.1.1	Tomato	nucleus	21.41	20.95
Solyc02g089410.2.1	Tomato	nucleus	14.91	16.82
Solyc03g114680.2.1	Tomato	nucleus	17.89	13.25
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	14.09	13.1

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BJS2
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc03g098590.2	EnsemblPlants:Solyc03g098590.2.1	UniParc:UPI0002768953	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:60896996..60900673

Molecular Weight (calculated)

39254.1 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.318

Length

369 amino acids

Sequence
(BLAST)

001: MSSAGADGGG GAAGNQPQNY HCYQCEQTVT ITPSPNSELS CPNCNGTFLE ESETAPPSNP NPNTHPFFSA ATTDDLPFGG GFPIVFSSNA ASPAGGAVGF
101: DDLSALFGGM AGGSAALPGR SPNQFDPFAF LNNYFSSMRG GNIQLIFENH PDGGGGGAGG DFRIPGNLGD YFLGPGLEQL IQQLAENDPN RHGTPPAAKS
201: AVAGLPDIKI TEELLDSDSS QCAVCKDTFE LGMEAKQIPC KHIYHKDCIM PWLELHNSCP VCRYELPTDD PDYENRKTSQ QQTVGEIRTV LRHLVQGRGG
301: LGYHCNGFSG DLDHLLRRAT VEEQAMMLTI ATTTMLLVGS LIQVLEGSRG RRISIKIALV SQVVKESEK

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.