Factsheet for Solyc11g012950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002370	Potato	cytosol	88.29	91.02
VIT_18s0001g03270.t01	Wine grape	nucleus	46.85	46.85
CDX74533	Canola	cytosol	39.94	45.55
KRH64713	Soybean	nucleus	45.95	43.47
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.34	43.38
CDY01669	Canola	plastid	41.14	42.41
GSMUA_Achr7P13060_001	Banana	mitochondrion	30.63	41.46
AT1G60360.1	Thale cress	nucleus	39.94	40.67
TraesCS6D01G309800.1	Wheat	mitochondrion	33.03	34.59
Zm00001d052154_P001	Maize	mitochondrion	32.73	34.28
Os02t0767600-00	Rice	mitochondrion	33.33	33.84
TraesCS6A01G330700.1	Wheat	mitochondrion	32.73	33.44
Zm00001d018190_P001	Maize	mitochondrion	33.33	33.33
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	33.03	33.03
TraesCS6B01G361600.1	Wheat	mitochondrion	33.03	32.64
TraesCS7B01G074800.1	Wheat	mitochondrion	30.93	31.99
HORVU0Hr1G019650.1	Barley	mitochondrion	30.33	31.86
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.43	31.76
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	30.33	31.66
TraesCS7D01G170800.1	Wheat	mitochondrion	30.03	31.25
KXG31176	Sorghum	plastid	33.33	31.18
EER89401	Sorghum	mitochondrion, nucleus	31.23	31.14
Solyc01g009000.2.1	Tomato	plastid	26.13	27.36
Solyc08g075910.1.1	Tomato	nucleus	23.12	25.58
Solyc01g104260.2.1	Tomato	mitochondrion	21.32	23.67
Solyc06g005650.2.1	Tomato	extracellular	14.11	23.5
Solyc03g098590.2.1	Tomato	cytosol	24.02	21.68
Solyc04g009170.1.1	Tomato	nucleus	19.82	21.36
Solyc04g011610.1.1	Tomato	nucleus	24.32	20.51
Solyc01g050040.2.1	Tomato	nucleus	14.41	16.44
Solyc09g074460.1.1	Tomato	nucleus	18.32	16.18
Solyc02g089410.2.1	Tomato	nucleus	11.11	11.31
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	11.41	9.57
Solyc03g114680.2.1	Tomato	nucleus	14.11	9.44

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4D699
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g012950.1	EnsemblPlants:Solyc11g012950.1.1	UniParc:UPI000276A294	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:5796734..5797823

Molecular Weight (calculated)

38225.4 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.580

Length

333 amino acids

Sequence
(BLAST)

001: MSSIENPNSG NRTFHRYWCY QCHLIVRVSP ENPSEIICPR CFGHFLCEIN ETNPGQILDF TAFDPSPEAR ILEALTLMLD PNLFNTSQAN VVPIFRRSDG
101: TETLVPPPTR GRERIRDFWL RPRRIYSFLN DTDEFTPESG ILARPRSWIV IRPSLGGPGP DRRERRRLGP PDVNNNRDYF TGPDLENLIE ELTQNDRPGP
201: APAPEPIIHS IPTVVIAAAH LKDDSECPVC KEKFKIGGEA RELPCKHIYH SDCIVPWLRL HNSCPVCRNP VPVTSEAQVD SSDDCVEEEV RMNRQRRCFR
301: LRQMAASLWP FRSRYRAMRN HDEPSVQSSC NIL

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.