Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 100.0 | 89.85 |
| CDY01669 | Canola | plastid | 89.04 | 80.5 |
| AT1G60360.1 | Thale cress | nucleus | 78.42 | 70.03 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 47.6 | 41.74 |
| PGSC0003DMT400002370 | Potato | cytosol | 45.21 | 40.87 |
| Solyc11g012950.1.1 | Tomato | cytosol | 45.55 | 39.94 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 32.19 | 38.21 |
| KRH64713 | Soybean | nucleus | 45.89 | 38.07 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 34.93 | 31.97 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 34.93 | 31.88 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 34.25 | 31.55 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 34.59 | 31.37 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 33.56 | 30.82 |
| Os02t0767600-00 | Rice | mitochondrion | 34.59 | 30.79 |
| EER89401 | Sorghum | mitochondrion, nucleus | 34.93 | 30.54 |
| Zm00001d018190_P001 | Maize | mitochondrion | 34.59 | 30.33 |
| Zm00001d052154_P001 | Maize | mitochondrion | 32.88 | 30.19 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 33.56 | 30.06 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 34.93 | 30.0 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 33.9 | 29.73 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 33.56 | 29.08 |
| CDX75998 | Canola | nucleus | 18.49 | 28.12 |
| KXG31176 | Sorghum | plastid | 33.9 | 27.81 |
| CDY72364 | Canola | cytosol | 20.55 | 27.03 |
| CDY36069 | Canola | cytosol | 19.86 | 26.73 |
| CDX82271 | Canola | cytosol | 19.18 | 26.29 |
| CDY23878 | Canola | mitochondrion, nucleus | 27.4 | 26.23 |
| CDY27204 | Canola | mitochondrion, nucleus | 27.74 | 25.96 |
| CDY22483 | Canola | mitochondrion | 26.03 | 25.08 |
| CDX72127 | Canola | mitochondrion | 27.05 | 25.0 |
| CDX79968 | Canola | mitochondrion, nucleus | 25.34 | 24.92 |
| CDY46577 | Canola | nucleus | 24.32 | 24.4 |
| CDY35437 | Canola | mitochondrion, nucleus | 26.37 | 24.29 |
| CDY22790 | Canola | nucleus | 21.92 | 23.7 |
| CDY33437 | Canola | cytosol | 26.03 | 23.46 |
| CDX74839 | Canola | cytosol, plastid | 25.34 | 22.84 |
| CDX94901 | Canola | cytosol | 23.97 | 22.29 |
| CDY20473 | Canola | nucleus, plastid | 25.34 | 22.16 |
| CDY24592 | Canola | nucleus | 24.32 | 22.12 |
| CDY26096 | Canola | nucleus | 21.92 | 21.77 |
| CDY53450 | Canola | cytosol | 23.97 | 21.74 |
| CDX94665 | Canola | nucleus | 17.47 | 21.7 |
| CDY32333 | Canola | cytosol | 17.47 | 21.7 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 23.97 | 21.67 |
| CDX80258 | Canola | plastid | 26.03 | 21.41 |
| CDY07641 | Canola | nucleus | 27.4 | 21.39 |
| CDY24951 | Canola | nucleus | 27.4 | 21.33 |
| CDY10554 | Canola | cytosol | 22.26 | 21.31 |
| CDX92768 | Canola | nucleus | 22.26 | 21.04 |
| CDY50031 | Canola | cytosol | 20.89 | 21.03 |
| CDY32791 | Canola | nucleus | 25.0 | 20.74 |
| CDY68603 | Canola | cytosol | 17.12 | 20.66 |
| CDY56080 | Canola | cytosol | 19.86 | 20.42 |
| CDY43991 | Canola | nucleus | 21.58 | 20.39 |
| CDY42507 | Canola | cytosol | 23.63 | 20.35 |
| CDY56022 | Canola | nucleus | 21.58 | 20.13 |
| CDX92770 | Canola | nucleus | 22.26 | 20.06 |
| CDY48679 | Canola | cytosol, plastid | 22.95 | 20.06 |
| CDY08249 | Canola | cytosol | 22.95 | 20.0 |
| CDY42740 | Canola | nucleus | 21.92 | 19.88 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 19.52 | 19.66 |
| CDX88709 | Canola | cytosol, plastid | 26.37 | 19.54 |
| CDY61251 | Canola | cytosol | 23.97 | 19.39 |
| CDY33046 | Canola | plastid | 22.6 | 19.3 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 19.52 | 19.06 |
| CDY56081 | Canola | nucleus | 15.41 | 18.83 |
| CDX99105 | Canola | cytosol, plastid | 19.86 | 17.9 |
| CDX89343 | Canola | cytosol, mitochondrion | 20.89 | 17.33 |
| CDY28208 | Canola | cytosol | 13.7 | 17.24 |
| CDX94342 | Canola | mitochondrion, nucleus | 22.6 | 17.05 |
| CDY01221 | Canola | cytosol | 10.96 | 14.68 |
| CDX69496 | Canola | cytosol | 14.04 | 14.24 |
| CDX90972 | Canola | cytosol | 15.75 | 13.73 |
| CDY58938 | Canola | nucleus | 19.86 | 13.15 |
| CDY03622 | Canola | nucleus | 19.86 | 13.0 |
| CDX78323 | Canola | cytosol | 12.67 | 12.85 |
| CDY69134 | Canola | cytosol | 12.67 | 12.71 |
| CDY26465 | Canola | cytosol | 14.73 | 12.68 |
| CDX85531 | Canola | cytosol | 14.73 | 12.54 |
| CDY51628 | Canola | peroxisome | 16.78 | 12.07 |
| CDY02194 | Canola | peroxisome | 16.44 | 12.06 |
| CDX69973 | Canola | cytosol | 14.04 | 11.39 |
| CDY21513 | Canola | cytosol | 13.7 | 11.24 |
| CDY34721 | Canola | cytosol | 14.38 | 10.77 |
| CDY34722 | Canola | cytosol | 14.38 | 10.77 |
| CDY11934 | Canola | nucleus | 23.97 | 10.74 |
| CDY23599 | Canola | golgi, mitochondrion | 21.58 | 10.34 |
Protein Annotations
| EnsemblPlants:CDX74533 | EnsemblPlantsGene:GSBRNA2T00114449001 | Gene3D:3.30.40.10 | GO:A0A078CHT5 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF4 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDX74533 | ProteinID:CDX74533.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE3484 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g08560D
Coordinates
chrLK031801:+:1215645..1216622
Molecular Weight (calculated)
33330.8 Da
IEP (calculated)
8.573
GRAVY (calculated)
-0.670
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSVPIRRT DGAPNGAFRT FGLYWCYHCH RTVRIASSNP LEIACPRCLR QFVVEIEMRR PRVTFTHAAP PLDASPETRL LEALSLMFDP PIIGRFGEDP
101: FLRARRTYVI LRPTDPTSPL GNRIEPAPPR RMNPRDFFTG GSGLEQLIEQ LTQDDRPGPP PAPEPTIDAL PTVTITSKHL TNDTSQCTVC MEDFVPGGEA
201: TELPCKHIYH KNCITPWLRL HNSCPICRRD LPPPVNNTVT DSQERSDSTR EEVPERRRPR WMQFWNMGPS RARYQRVSPE ETAHRNTRGN RS
101: FLRARRTYVI LRPTDPTSPL GNRIEPAPPR RMNPRDFFTG GSGLEQLIEQ LTQDDRPGPP PAPEPTIDAL PTVTITSKHL TNDTSQCTVC MEDFVPGGEA
201: TELPCKHIYH KNCITPWLRL HNSCPICRRD LPPPVNNTVT DSQERSDSTR EEVPERRRPR WMQFWNMGPS RARYQRVSPE ETAHRNTRGN RS
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.