CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82271	Canola	cytosol	92.63	94.37
CDY72364	Canola	cytosol	83.87	81.98
CDY33437	Canola	cytosol	83.87	56.17
CDY24592	Canola	nucleus	79.72	53.89
CDY25360	Canola	cytosol, nucleus, plastid	79.72	53.56
AT3G19950.2	Thale cress	cytosol	82.95	46.63
CDY22790	Canola	nucleus	46.54	37.41
KRH36132	Soybean	nucleus	47.93	36.36
KRG90622	Soybean	nucleus	49.77	36.24
PGSC0003DMT400082489	Potato	nucleus	53.46	36.02
Solyc04g009170.1.1	Tomato	nucleus	50.23	35.28
Zm00001d045625_P001	Maize	cytosol	49.77	34.84
EER89027	Sorghum	nucleus	50.23	33.96
VIT_17s0053g00320.t01	Wine grape	plastid	53.92	31.71
Os06t0101300-01	Rice	nucleus	49.31	31.66
TraesCS7D01G000400.1	Wheat	cytosol	47.93	31.52
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	47.47	30.75
CDY42507	Canola	cytosol	47.93	30.68
CDX75998	Canola	nucleus	25.35	28.65
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	46.08	28.01
CDY46577	Canola	nucleus	37.33	27.84
CDY26096	Canola	nucleus	33.18	24.49
CDY35437	Canola	mitochondrion, nucleus	35.02	23.97
CDY22483	Canola	mitochondrion	33.18	23.76
CDY23878	Canola	mitochondrion, nucleus	33.18	23.61
CDX72127	Canola	mitochondrion	34.1	23.42
CDY43991	Canola	nucleus	33.18	23.3
CDY32791	Canola	nucleus	37.79	23.3
CDY27204	Canola	mitochondrion, nucleus	33.18	23.08
CDY56081	Canola	nucleus	25.35	23.01
CDX92768	Canola	nucleus	32.72	22.98
CDY10554	Canola	cytosol	32.26	22.95
CDX94901	Canola	cytosol	32.72	22.61
CDY08249	Canola	cytosol	34.56	22.39
CDY32333	Canola	cytosol	23.96	22.13
CDY28208	Canola	cytosol	23.5	21.98
CDX92770	Canola	nucleus	32.72	21.91
CDY56022	Canola	nucleus	31.34	21.73
CDY42740	Canola	nucleus	31.34	21.12
CDY50031	Canola	cytosol	28.11	21.03
CDX94665	Canola	nucleus	22.58	20.85
CDY56080	Canola	cytosol	27.19	20.77
CDY68603	Canola	cytosol	23.04	20.66
CDX80258	Canola	plastid	33.64	20.56
CDX79968	Canola	mitochondrion, nucleus	28.11	20.54
CDX89343	Canola	cytosol, mitochondrion	32.72	20.17
CDY20473	Canola	nucleus, plastid	30.88	20.06
CDX81263	Canola	cytosol, peroxisome, plastid	26.73	20.0
CDX74533	Canola	cytosol	26.73	19.86
CDY53450	Canola	cytosol	29.03	19.57
CDX88709	Canola	cytosol, plastid	35.48	19.54
CDX74839	Canola	cytosol, plastid	29.03	19.44
CDY18690	Canola	cytosol, peroxisome, plastid	26.73	19.4
CDY61251	Canola	cytosol	32.26	19.39
CDX94342	Canola	mitochondrion, nucleus	33.64	18.86
CDY01669	Canola	plastid	27.65	18.58
CDY33046	Canola	plastid	29.03	18.42
CDY24951	Canola	nucleus	31.34	18.13
CDY48679	Canola	cytosol, plastid	27.65	17.96
CDY07641	Canola	nucleus	30.88	17.91
CDX99105	Canola	cytosol, plastid	26.27	17.59
CDY69134	Canola	cytosol	21.2	15.81
CDX78323	Canola	cytosol	20.74	15.62
CDY01221	Canola	cytosol	15.67	15.6
CDX90972	Canola	cytosol	23.96	15.52
CDX85531	Canola	cytosol	23.96	15.16
CDY58938	Canola	nucleus	29.95	14.74
CDY03622	Canola	nucleus	29.95	14.57
CDX69496	Canola	cytosol	18.89	14.24
CDY26465	Canola	cytosol	21.66	13.86
CDY11934	Canola	nucleus	38.71	12.88
CDY34722	Canola	cytosol	23.04	12.82
CDY34721	Canola	cytosol	22.58	12.56
CDX69973	Canola	cytosol	20.28	12.22
CDY21513	Canola	cytosol	19.82	12.08
CDY02194	Canola	peroxisome	22.12	12.06
CDY23599	Canola	golgi, mitochondrion	33.18	11.82
CDY51628	Canola	peroxisome	22.12	11.82

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078HF99
UniProt:A0A078HF99	EnsemblPlants:CDY36069	ProteinID:CDY36069	ProteinID:CDY36069.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00059900001	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF1	SMART:SM00184	SMART:SM00744
SUPFAM:SSF57850	UniParc:UPI0004EE1AFA	InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC03g41290DBnaC03g41290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF99]

Coordinates

chrLK032366:-:334808..336173

Molecular Weight (calculated)

23726.6 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.722

Length

217 amino acids

Sequence
(BLAST)

001: MQPRSTRNDA FDPVSFLQNH LQHLRSSGTH VQFVIENHPS DPSNRIPGNL GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAVDGLPTV KVTKDMLRSE
101: MNQCAVCMDE FEDGGDVKQM PCKHVFHQDC LMPWLELHNS CPVCRFELPT DDPEYESRVQ GRGGEASGGG QGAVETGRRF SIQVPLPFRG RDGEGSGSGA
201: PGTGGGANLE TRRDDLD

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.