Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68603 | Canola | cytosol | 94.89 | 92.15 |
| CDY32333 | Canola | cytosol | 64.68 | 64.68 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 43.4 | 35.17 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 43.4 | 34.11 |
| AT5G64920.1 | Thale cress | cytosol | 44.26 | 31.14 |
| KRG90607 | Soybean | nucleus | 40.0 | 27.89 |
| KRH36150 | Soybean | nucleus | 39.15 | 27.63 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 36.17 | 25.45 |
| Solyc09g074460.1.1 | Tomato | nucleus | 38.72 | 24.14 |
| PGSC0003DMT400081469 | Potato | nucleus | 37.87 | 23.55 |
| CDY36069 | Canola | cytosol | 20.85 | 22.58 |
| CDX82271 | Canola | cytosol | 20.0 | 22.07 |
| CDY43991 | Canola | nucleus | 28.94 | 22.01 |
| CDY72364 | Canola | cytosol | 20.0 | 21.17 |
| CDX75998 | Canola | nucleus | 17.02 | 20.83 |
| CDY26096 | Canola | nucleus | 25.53 | 20.41 |
| CDY50031 | Canola | cytosol | 25.11 | 20.34 |
| CDY46577 | Canola | nucleus | 24.68 | 19.93 |
| CDX99105 | Canola | cytosol, plastid | 27.23 | 19.75 |
| CDY10554 | Canola | cytosol | 25.53 | 19.67 |
| CDY22790 | Canola | nucleus | 22.55 | 19.63 |
| CDY28208 | Canola | cytosol | 19.15 | 19.4 |
| CDY56080 | Canola | cytosol | 23.4 | 19.37 |
| CDY56081 | Canola | nucleus | 19.15 | 18.83 |
| CDY61251 | Canola | cytosol | 28.51 | 18.56 |
| CDY56022 | Canola | nucleus | 24.68 | 18.53 |
| CDX79968 | Canola | mitochondrion, nucleus | 23.4 | 18.52 |
| CDY22483 | Canola | mitochondrion | 23.83 | 18.48 |
| CDY33437 | Canola | cytosol | 25.11 | 18.21 |
| CDY08249 | Canola | cytosol | 25.96 | 18.21 |
| CDY33046 | Canola | plastid | 26.38 | 18.13 |
| CDY24592 | Canola | nucleus | 24.68 | 18.07 |
| CDX72127 | Canola | mitochondrion | 24.26 | 18.04 |
| CDY23878 | Canola | mitochondrion, nucleus | 23.4 | 18.03 |
| CDY20473 | Canola | nucleus, plastid | 25.53 | 17.96 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 24.68 | 17.96 |
| CDY27204 | Canola | mitochondrion, nucleus | 23.83 | 17.95 |
| CDY35437 | Canola | mitochondrion, nucleus | 23.83 | 17.67 |
| CDY24951 | Canola | nucleus | 28.09 | 17.6 |
| CDX74839 | Canola | cytosol, plastid | 24.26 | 17.59 |
| CDX92768 | Canola | nucleus | 22.98 | 17.48 |
| CDX74533 | Canola | cytosol | 21.7 | 17.47 |
| CDX80258 | Canola | plastid | 26.38 | 17.46 |
| CDY07641 | Canola | nucleus | 27.66 | 17.38 |
| CDX89343 | Canola | cytosol, mitochondrion | 25.53 | 17.05 |
| CDY53450 | Canola | cytosol | 22.98 | 16.77 |
| CDY48679 | Canola | cytosol, plastid | 23.83 | 16.77 |
| CDX92770 | Canola | nucleus | 22.98 | 16.67 |
| CDY42740 | Canola | nucleus | 22.55 | 16.46 |
| CDY32791 | Canola | nucleus | 24.26 | 16.19 |
| CDY69134 | Canola | cytosol | 20.0 | 16.15 |
| CDX94342 | Canola | mitochondrion, nucleus | 26.38 | 16.02 |
| CDX88709 | Canola | cytosol, plastid | 26.81 | 15.99 |
| CDX78323 | Canola | cytosol | 19.57 | 15.97 |
| CDY42507 | Canola | cytosol | 22.55 | 15.63 |
| CDY01669 | Canola | plastid | 21.28 | 15.48 |
| CDY34722 | Canola | cytosol | 24.68 | 14.87 |
| CDY34721 | Canola | cytosol | 23.83 | 14.36 |
| CDX94901 | Canola | cytosol | 19.15 | 14.33 |
| CDX90972 | Canola | cytosol | 20.0 | 14.03 |
| CDY01221 | Canola | cytosol | 12.77 | 13.76 |
| CDX69973 | Canola | cytosol | 20.85 | 13.61 |
| CDY26465 | Canola | cytosol | 19.57 | 13.57 |
| CDX85531 | Canola | cytosol | 19.57 | 13.41 |
| CDX69496 | Canola | cytosol | 16.17 | 13.19 |
| CDY58938 | Canola | nucleus | 24.26 | 12.93 |
| CDY21513 | Canola | cytosol | 19.57 | 12.92 |
| CDY03622 | Canola | nucleus | 24.26 | 12.78 |
| CDY02194 | Canola | peroxisome | 21.28 | 12.56 |
| CDY51628 | Canola | peroxisome | 21.28 | 12.32 |
| CDY23599 | Canola | golgi, mitochondrion | 28.94 | 11.17 |
| CDY11934 | Canola | nucleus | 26.81 | 9.66 |
Protein Annotations
| EnsemblPlants:CDX94665 | EnsemblPlantsGene:GSBRNA2T00158001001 | Gene3D:3.30.40.10 | GO:A0A078DZ91 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDX94665 | ProteinID:CDX94665.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEFD41 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g09930D
Coordinates
chrLK031883:-:926124..926831
Molecular Weight (calculated)
26607.4 Da
IEP (calculated)
8.070
GRAVY (calculated)
-0.691
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAQESYWC YRCFKHVAVR TLDDEVLCCE CNNGFVGLIQ AIPAAHSTEI EVQSYGLHQR RESNLERVIN RLSSRHEASP PNTLERVAGS IGGRRGAPPA
101: AKSAVEALET FEVGSTSSEE GERTAVMCAV CKDAMVMGEI GKKLPCGHFY HDNCILPWLE KRNSCPVCRF QLPTNDPRYE RKRAREEPHL TVSAGAYSSS
201: LMSEREENSN HHVFETRRRT PRKRRPNRYT GHFAH
101: AKSAVEALET FEVGSTSSEE GERTAVMCAV CKDAMVMGEI GKKLPCGHFY HDNCILPWLE KRNSCPVCRF QLPTNDPRYE RKRAREEPHL TVSAGAYSSS
201: LMSEREENSN HHVFETRRRT PRKRRPNRYT GHFAH
001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
Arabidopsis Description
CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.