CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11677
KRH14801
KRH36679
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	KRH14801	AT2G32950.1	10488108
AT5G64920.1	KRH73341	AT2G32950.1	10488108
AT5G64920.1	KRH14801	AT2G32950.1	12028569
AT5G64920.1	KRH73341	AT2G32950.1	12028569
AT5G64920.1	KRH14801	AT2G32950.1	12827204
AT5G64920.1	KRH73341	AT2G32950.1	12827204
AT5G64920.1	KRH11677	AT3G52155.1	21798944
AT5G64920.1	KRH36679	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90607	Soybean	nucleus	93.99	92.88
Solyc09g074460.1.1	Tomato	nucleus	62.76	55.44
PGSC0003DMT400081469	Potato	nucleus	62.16	54.76
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	54.65	54.49
CDX81263	Canola	cytosol, peroxisome, plastid	44.44	51.03
CDY18690	Canola	cytosol, peroxisome, plastid	45.65	50.84
AT5G64920.1	Thale cress	cytosol	50.75	50.6
Bra037800.1-P	Field mustard	cytosol	45.65	50.33
CDY32333	Canola	cytosol	29.43	41.7
CDX94665	Canola	nucleus	27.63	39.15
Bra030136.1-P	Field mustard	cytosol	27.63	38.02
CDY68603	Canola	cytosol	27.63	38.02
KRH36132	Soybean	nucleus	22.52	26.22
KRG97316	Soybean	nucleus	27.03	26.16
KRH23103	Soybean	nucleus	24.32	25.8
KRG90622	Soybean	nucleus	22.82	25.5
KRH10229	Soybean	nucleus	23.42	24.84
KRH70139	Soybean	nucleus	23.12	24.14
KRH08483	Soybean	cytosol, nucleus, plastid	23.12	23.91
KRH09399	Soybean	nucleus	25.53	23.04
KRH29763	Soybean	nucleus	24.62	22.71
KRH38895	Soybean	nucleus	25.53	22.61
KRH18634	Soybean	nucleus	15.62	22.03
KRH33121	Soybean	nucleus	20.42	22.01
KRH71659	Soybean	nucleus	20.42	22.01
KRH24759	Soybean	nucleus	23.72	21.88
KRH49133	Soybean	plastid	20.12	21.82
KRG99997	Soybean	plastid	20.42	21.79
KRH18631	Soybean	nucleus	19.82	21.57
KRH56750	Soybean	cytosol	21.92	21.34
KRG97885	Soybean	mitochondrion	21.92	20.45
KRH30994	Soybean	nucleus	24.02	20.36
KRH44018	Soybean	mitochondrion	19.22	20.19
KRH10441	Soybean	mitochondrion	19.22	19.94
KRH03189	Soybean	nucleus	21.02	19.72
KRH14643	Soybean	nucleus	19.82	19.64
KRH18313	Soybean	nucleus	21.92	19.52
KRH73496	Soybean	mitochondrion	21.02	18.87
KRH64713	Soybean	nucleus	19.82	18.75
KRH15082	Soybean	nucleus	21.32	18.59
KRG93748	Soybean	nucleus, plastid	21.02	18.42
KRH73053	Soybean	nucleus	21.32	18.16
KRH40635	Soybean	nucleus, plastid	24.32	14.7
KRH00522	Soybean	plastid	24.02	14.31

Protein Annotations

EntrezGene:100802200	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G286700	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630
UniProt:I1LF96	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH36150	ProteinID:KRH36150	ProteinID:KRH36150.1
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000233D523	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:50629655..50631048

Molecular Weight (calculated)

36827.2 Da

IEP (calculated)

4.306

GRAVY (calculated)

-0.777

Length

333 amino acids

Sequence
(BLAST)

001: MSEAPPSQPS PPTANASPPP YWCYHCEKRV SIETLANLPD VVCGECKNGF VESIHTPSRS RSPSASSDDP YFGSQFLQVL RLIAQSARDD DASPPPPPSR
101: SPENDFLRIE LGGWDNDEEN DNDNNDDEEF EEHEEAEDRS GNEDPHGRDD EDLRRRRREL LRLRIRDLAT RTRSMRNRIL DWAEILMGLE DNSIEFRLQL
201: PESDRYVGNP EDYVDAAEYE ALLHTLAESD GGGRRGAPPA SKAAVEALPT VKIASESEAV ACAICKDLLG VGDLAKRLPC GHGYHGDCIV PWLSSRNSCP
301: VCRYELPTDD KEYEEERVVN SASSSGGGGS AIV

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.