CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00522	Soybean	plastid	93.65	92.31
VIT_08s0056g00320.t01	Wine grape	mitochondrion	53.72	50.17
AT5G01980.1	Thale cress	nucleus	42.83	47.87
CDY03622	Canola	nucleus	37.39	46.19
Bra014266.1-P	Field mustard	nucleus	36.84	46.03
CDY58938	Canola	nucleus	36.48	45.58
CDY01221	Canola	cytosol	16.88	42.66
PGSC0003DMT400071362	Potato	nucleus	35.39	41.23
GSMUA_Achr4P02460_001	Banana	nucleus	30.13	40.1
TraesCS5D01G146400.1	Wheat	nucleus	32.49	35.24
TraesCS5B01G144700.1	Wheat	nucleus	32.12	34.71
TraesCS5A01G145800.1	Wheat	nucleus	31.94	34.51
Os11t0119200-01	Rice	nucleus	29.95	33.6
Os12t0118700-01	Rice	nucleus	29.58	32.67
KRH36132	Soybean	nucleus	14.16	27.27
GSMUA_Achr11P...	Banana	cytosol	34.85	26.48
KRG90622	Soybean	nucleus	14.16	26.17
KRH33121	Soybean	nucleus	13.79	24.6
KRH71659	Soybean	nucleus	13.79	24.6
KRH36150	Soybean	nucleus	14.7	24.32
KRG90607	Soybean	nucleus	14.52	23.74
KRH10229	Soybean	nucleus	13.43	23.57
KRH23103	Soybean	nucleus	13.25	23.25
KRH09399	Soybean	nucleus	15.24	22.76
KRH24759	Soybean	nucleus	14.7	22.44
KRH38895	Soybean	nucleus	15.24	22.34
KRH29763	Soybean	nucleus	14.52	22.16
KRH14643	Soybean	nucleus	13.25	21.73
KRG97885	Soybean	mitochondrion	13.97	21.57
KRH18631	Soybean	nucleus	11.98	21.57
KRG99997	Soybean	plastid	12.16	21.47
KRH30994	Soybean	nucleus	15.24	21.37
KRH49133	Soybean	plastid	11.62	20.85
KRH10441	Soybean	mitochondrion	11.98	20.56
KRG97316	Soybean	nucleus	12.52	20.06
KRH44018	Soybean	mitochondrion	11.43	19.87
KRH73053	Soybean	nucleus	13.97	19.69
KRH08483	Soybean	cytosol, nucleus, plastid	11.43	19.57
KRH18634	Soybean	nucleus	8.35	19.49
KRH73496	Soybean	mitochondrion	13.07	19.41
KRH15082	Soybean	nucleus	13.25	19.11
KRH70139	Soybean	nucleus	10.89	18.81
KRH56750	Soybean	cytosol	11.07	17.84
KRH64713	Soybean	nucleus	11.25	17.61
KRH03189	Soybean	nucleus	10.89	16.9
KRH18313	Soybean	nucleus	11.43	16.84
KRG93748	Soybean	nucleus, plastid	11.62	16.84

Protein Annotations

EntrezGene:100797923	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02006044	EnsemblPlantsGene:GLYMA_09G271200	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	UniProt:I1L6W7	InterPro:IPR001841	InterPro:IPR013083
ProteinID:KRH40634.1	EnsemblPlants:KRH40635	ProteinID:KRH40635	ProteinID:KRH40635.1	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002338E97	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:48796976..48800096

Molecular Weight (calculated)

61221.2 Da

IEP (calculated)

4.448

GRAVY (calculated)

-0.720

Length

551 amino acids

Sequence
(BLAST)

001: MAANSGNISF ASSQSSSQIH GSTDTVQVAV CSLCQKALSP DNEMASDLAS SGVCGDCKFL LLEDFGNHTV TQSSRRRLRG RFRHNSSESV ENNFSQQIPH
101: VVNTVRQHQS AVSGEDDQLV DGDTPAWSLQ YASTHTTPSG SRRWRQVLSD TDSDGFDNWN SLYGENESSA SFRQYRVPHG ETDSFSHSAY GGDSDISMDT
201: HSFEGTGVFN LPDEGDEFDS DTDIDPMHAG LSQWISTDED DEEEEEEEEE GDREWELAEA EEAEATSHLQ IFFTSSPSES RDRINSTESG GMFSQIIRET
301: WHGFEDVDLP HGANFGDYLD ARHFEDLLEH LAENDSSRRG APPAAVSFVN NLPRVVIGKE HEKHGELVCA ICKDVLAPRT EVNQLPCSHL YHINCILPWL
401: SARNSCPLCR YELPTDDKDY EEGKQNIDSR NVIHERQRID VTDDSYSDVS DGDEVNGSGQ GGIRQRLLSS GSTVDSSATR SGRGRWFFLA AAPIVSLVGI
501: VLVLWLGNNS QNEGSRHLGS HYLSGQNQHA VHAYSSPNQR ESRSRRWWCP F

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.