CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40635	Soybean	nucleus, plastid	92.31	93.65
VIT_08s0056g00320.t01	Wine grape	mitochondrion	53.67	50.85
AT5G01980.1	Thale cress	nucleus	42.04	47.67
CDY03622	Canola	nucleus	37.75	47.31
Bra014266.1-P	Field mustard	nucleus	37.21	47.17
CDY58938	Canola	nucleus	36.85	46.71
CDY01221	Canola	cytosol	16.46	42.2
PGSC0003DMT400071362	Potato	nucleus	34.7	41.01
GSMUA_Achr4P02460_001	Banana	nucleus	29.7	40.1
TraesCS5D01G146400.1	Wheat	nucleus	31.84	35.04
TraesCS5B01G144700.1	Wheat	nucleus	31.31	34.31
TraesCS5A01G145800.1	Wheat	nucleus	31.31	34.31
Os11t0119200-01	Rice	nucleus	29.52	33.6
Os12t0118700-01	Rice	nucleus	29.16	32.67
KRH36132	Soybean	nucleus	14.13	27.62
GSMUA_Achr11P...	Banana	cytosol	34.53	26.62
KRG90622	Soybean	nucleus	13.95	26.17
KRH71659	Soybean	nucleus	14.13	25.57
KRH33121	Soybean	nucleus	14.13	25.57
KRH36150	Soybean	nucleus	14.31	24.02
KRG90607	Soybean	nucleus	14.13	23.44
KRH10229	Soybean	nucleus	13.06	23.25
KRH23103	Soybean	nucleus	12.88	22.93
KRH09399	Soybean	nucleus	14.85	22.49
KRH14643	Soybean	nucleus	13.42	22.32
KRH24759	Soybean	nucleus	14.31	22.16
KRH38895	Soybean	nucleus	14.85	22.07
KRH29763	Soybean	nucleus	14.13	21.88
KRH18631	Soybean	nucleus	11.81	21.57
KRG97885	Soybean	mitochondrion	13.77	21.57
KRH30994	Soybean	nucleus	14.85	21.12
KRG99997	Soybean	plastid	11.63	20.83
KRG97316	Soybean	nucleus	12.7	20.64
KRH49133	Soybean	plastid	11.09	20.2
KRH73496	Soybean	mitochondrion	13.24	19.95
KRH10441	Soybean	mitochondrion	11.45	19.94
KRH08483	Soybean	cytosol, nucleus, plastid	11.45	19.88
KRH18634	Soybean	nucleus	8.23	19.49
KRH73053	Soybean	nucleus	13.6	19.44
KRH70139	Soybean	nucleus	11.09	19.44
KRH44018	Soybean	mitochondrion	10.91	19.24
KRH15082	Soybean	nucleus	12.88	18.85
KRH56750	Soybean	cytosol	10.91	17.84
KRH64713	Soybean	nucleus	11.09	17.61
KRH03189	Soybean	nucleus	10.73	16.9
KRH18313	Soybean	nucleus	11.27	16.84
KRG93748	Soybean	nucleus, plastid	11.45	16.84

Protein Annotations

EntrezGene:100800933	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02011452	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G218200
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083
UniProt:K7MTX7	EnsemblPlants:KRH00522	ProteinID:KRH00522	ProteinID:KRH00522.1	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233E9A9	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:50521840..50523797

Molecular Weight (calculated)

62088.1 Da

IEP (calculated)

4.285

GRAVY (calculated)

-0.718

Length

559 amino acids

Sequence
(BLAST)

001: MAANFGNILF TSSQSSSQVH GATDSVQVAV CSLCQKALSP DNEMASDLAS SGVCGDCKFL LLEDFGNHTL TQSSRWRLRG RFRHNSSESV ENNFSQQIPH
101: VVNTVRQHQS AASGEDDQLV DGDTPAWSLQ YASAHTTPSG SRRWRQVLSD TDSDGFDNWN SLYGENESSA SFRQYRLPHG ETDSFSHSAY GGDSDISMDT
201: HSFVGTRVLN FPDEGDEFDS DTDIDPMHAG LSQWISTDED NEEEEEEEEE EEEEEDREWE LAEAEEAEAT SHLQIFFTSS PSESRDHINS TESGGMFSQI
301: IRETWHAFED VDLPHGANFG DYLDARGFED LLEHLAENDS SRRGAPPAAV SFVNNLPRVV IGKENEKHGE LVCAICKDVL TPGTEVNQLP CSHLYHNNCI
401: LPWLSARNSC PLCRYELPTD DKDYEEGKQN IDSRNVIHER QRIDVTDDSS SDVSDGDEVN EETGSSQGGI QQRLLSSGST MNSSATRSGR GRWFFLAAAP
501: IVSLVGIVLV LWLGNNNSQI EGSRHLGGHY LSGQNQHTIH AYSSPNQREG RSRGWWCPF

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.