Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 60.87 | 34.76 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 40.82 | 33.27 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 40.34 | 32.75 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 40.34 | 32.75 |
| Os11t0119200-01 | Rice | nucleus | 38.16 | 32.18 |
| CDY01221 | Canola | cytosol | 16.91 | 32.11 |
| Os12t0118700-01 | Rice | nucleus | 38.41 | 31.86 |
| AT5G01980.1 | Thale cress | nucleus | 37.2 | 31.24 |
| CDY03622 | Canola | nucleus | 33.09 | 30.72 |
| Bra014266.1-P | Field mustard | nucleus | 32.37 | 30.39 |
| CDY58938 | Canola | nucleus | 32.37 | 30.39 |
| KRH40635 | Soybean | nucleus, plastid | 40.1 | 30.13 |
| KRH00522 | Soybean | plastid | 40.1 | 29.7 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 40.82 | 28.64 |
| PGSC0003DMT400071362 | Potato | nucleus | 32.13 | 28.12 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 12.08 | 26.18 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 10.14 | 22.58 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 13.77 | 22.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.53 | 21.71 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 12.08 | 21.64 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 15.7 | 20.57 |
| GSMUA_Achr10P... | Banana | mitochondrion | 15.7 | 19.29 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 15.22 | 19.15 |
| GSMUA_Achr10P... | Banana | nucleus | 12.56 | 18.44 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 13.04 | 18.43 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 10.87 | 18.29 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 15.46 | 18.23 |
| GSMUA_Achr11P... | Banana | mitochondrion | 13.04 | 18.06 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 14.73 | 17.73 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 14.98 | 17.66 |
| GSMUA_Achr11P... | Banana | nucleus | 11.11 | 17.04 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 14.49 | 16.57 |
| GSMUA_Achr10P... | Banana | nucleus | 11.84 | 16.17 |
| GSMUA_Achr10P... | Banana | mitochondrion | 15.7 | 16.17 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 11.59 | 16.11 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 14.73 | 15.4 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 11.11 | 15.33 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 13.29 | 10.54 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr4G02460_001 |
| EnsemblPlants:GSMUA_Achr4P02460_001 | EnsemblPlants:GSMUA_Achr4T02460_001 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M0SKG3 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000294D3B6 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G02460_001]
Coordinates
chr4:-:2155213..2156929
Molecular Weight (calculated)
46760.4 Da
IEP (calculated)
4.390
GRAVY (calculated)
-0.672
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSFSRRFS QLINLANQNS EAQLGGDTPA RRRVSYYAAR SRSLRWHNVL SDNDNDALDQ SDLVFGETDS SFSFGGYGGE SDASLDTHSI LDREMSFQLE
101: NESYVSTDTD IDPMHAGLDL FEFDARYDNV GDDRDYGDWI GTNLVEANRS VHTHQQFEDA NFSPSGSGMA GAQDGSWFQQ TEGETQSRHA DFFTDLDVVE
201: LRRAYVGNPG DYLDDEVLEQ LAEAAGSSGA PPAAVSSVRI LPSVVISDDH ENNGIQICAV CKDPLPINTE AKQLPCMHLY HPFCILPWLK IRNSCPVCRY
301: ELPTDDPDYE EAKRDQNRNE RHESWPPDRA EETYEAFTEL ETDEAHDFKS SRGRWMFLAA APIVSLVGFV LVVWLRKPAV YGRTQGSNFS ERHLHQTRGS
401: TSPADRNRRW WSIF
101: NESYVSTDTD IDPMHAGLDL FEFDARYDNV GDDRDYGDWI GTNLVEANRS VHTHQQFEDA NFSPSGSGMA GAQDGSWFQQ TEGETQSRHA DFFTDLDVVE
201: LRRAYVGNPG DYLDDEVLEQ LAEAAGSSGA PPAAVSSVRI LPSVVISDDH ENNGIQICAV CKDPLPINTE AKQLPCMHLY HPFCILPWLK IRNSCPVCRY
301: ELPTDDPDYE EAKRDQNRNE RHESWPPDRA EETYEAFTEL ETDEAHDFKS SRGRWMFLAA APIVSLVGFV LVVWLRKPAV YGRTQGSNFS ERHLHQTRGS
401: TSPADRNRRW WSIF
001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
Arabidopsis Description
At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.