Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05060_001 | Banana | nucleus | 34.65 | 56.45 |
| GSMUA_Achr11P... | Banana | nucleus | 45.87 | 51.48 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 48.51 | 49.33 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 42.57 | 44.03 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 40.26 | 40.67 |
| Os03t0324900-01 | Rice | cytosol | 36.96 | 35.0 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 21.78 | 34.55 |
| Zm00001d047560_P001 | Maize | cytosol | 34.32 | 33.66 |
| KXG39475 | Sorghum | cytosol | 33.99 | 32.09 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 33.33 | 31.17 |
| Zm00001d008237_P001 | Maize | nucleus | 34.98 | 30.37 |
| Zm00001d040445_P001 | Maize | nucleus | 34.65 | 30.35 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 23.1 | 30.3 |
| EES00577 | Sorghum | nucleus | 35.64 | 30.08 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 33.99 | 29.86 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 33.99 | 29.6 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 33.66 | 29.14 |
| Os01t0276600-01 | Rice | nucleus | 30.69 | 28.27 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 33.66 | 27.72 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 33.99 | 27.69 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 33.99 | 27.47 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 22.11 | 27.24 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 33.66 | 27.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.44 | 26.36 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.11 | 25.87 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 26.4 | 25.32 |
| GSMUA_Achr11P... | Banana | mitochondrion | 24.75 | 25.08 |
| GSMUA_Achr10P... | Banana | mitochondrion | 26.4 | 23.74 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 26.4 | 22.79 |
| GSMUA_Achr10P... | Banana | nucleus | 20.13 | 21.63 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 23.43 | 21.58 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 24.75 | 21.37 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 24.09 | 21.22 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 24.75 | 20.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.41 | 19.15 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 16.17 | 11.84 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 15.18 | 11.62 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 14.85 | 8.62 |
| GSMUA_Achr11P... | Banana | cytosol | 19.14 | 8.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P05130_001 | EnsemblPlants:GSMUA_Achr10T05130_001 | EnsemblPlantsGene:GSMUA_Achr10G05130_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296D6D2 | UniProt:M0RFJ0 | MapMan:35.1 |
Description
Putative E3 ubiquitin-protein ligase RING1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G05130_001]
Coordinates
chr10:-:14762190..14763101
Molecular Weight (calculated)
32829.2 Da
IEP (calculated)
4.228
GRAVY (calculated)
-0.404
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPRVARYW CHMCSRTVNP IMEEEIKCAI CDGGFVEEMS GEGVDTATDP ESNTYLSLWA SFFTEMLDSD DDEEEEEGVM LGRRRRMSAI SRLLVDVLDD
101: AENEREPIIF IDNAILVLGS PDTNQSQGQS SVDGGTGVPL RDFLGLALDL ALQRPEETDL NRHGTPPAQK AAVEAMPTVK IEESLSCLVC LEDLEISAEA
201: REMPCKHKFH AGCILPWLEL HSSCPICRFQ MPTEESTSSS AGGNGDRVGV HDGSGNDSGG RDERGSRLPA TGPFSVLLSL LRSHRSGDSS SSQPSSSSTG
301: SNS
101: AENEREPIIF IDNAILVLGS PDTNQSQGQS SVDGGTGVPL RDFLGLALDL ALQRPEETDL NRHGTPPAQK AAVEAMPTVK IEESLSCLVC LEDLEISAEA
201: REMPCKHKFH AGCILPWLEL HSSCPICRFQ MPTEESTSSS AGGNGDRVGV HDGSGNDSGG RDERGSRLPA TGPFSVLLSL LRSHRSGDSS SSQPSSSSTG
301: SNS
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.