Factsheet for TraesCS3A01G189200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G192700.1	Wheat	cytosol	96.0	97.83
TraesCS3B01G218400.1	Wheat	cytosol	96.53	97.31
HORVU3Hr1G039220.1	Barley	cytosol	94.4	93.9
Zm00001d008237_P001	Maize	nucleus	56.27	60.46
Zm00001d040445_P001	Maize	nucleus	55.47	60.12
EES00577	Sorghum	nucleus	55.2	57.66
Os01t0276600-01	Rice	nucleus	46.4	52.89
GSMUA_Achr6P08590_001	Banana	nucleus	31.2	39.93
GSMUA_Achr5P07680_001	Banana	nucleus	31.2	39.26
GSMUA_Achr7P18340_001	Banana	nucleus	30.93	38.67
TraesCS4A01G129800.1	Wheat	cytosol	32.53	37.65
GSMUA_Achr9P05060_001	Banana	nucleus	18.13	36.56
GSMUA_Achr10P...	Banana	nucleus	27.47	33.99
TraesCS5A01G467700.1	Wheat	nucleus	32.53	30.2
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	24.53	27.46
TraesCS3A01G440000.1	Wheat	mitochondrion	19.2	24.91
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	24.27	24.59
TraesCS7A01G247700.1	Wheat	cytosol, plastid	17.07	23.79
TraesCS4A01G095800.1	Wheat	cytosol	17.6	23.57
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	19.2	22.57
TraesCS6A01G330700.1	Wheat	mitochondrion	18.93	21.78
TraesCS1A01G029800.1	Wheat	cytosol	22.4	21.05
TraesCS6A01G288800.1	Wheat	cytosol, plastid	16.27	19.87
TraesCS3A01G330900.1	Wheat	mitochondrion	17.87	16.63
TraesCS7A01G391700.1	Wheat	cytosol	14.4	16.31
TraesCS5A01G145800.1	Wheat	nucleus	16.8	12.35

Protein Annotations

EnsemblPlants:TraesCS3A01G189200.1	EnsemblPlantsGene:TraesCS3A01G189200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF5	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:+:231669951..231671078

Molecular Weight (calculated)

39686.8 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.369

Length

375 amino acids

Sequence
(BLAST)

001: MGELVVARRY WCHMCAAAVS PVAADAGVEI KCPYCGSGFL EEMETARSSV AAGTGHAHAH ASGTYPSADN AISIWAPIID SMVGDPVRRR RSNRRTVDAV
101: AAAEDELDNV DFSRRRRRAT AFLRLLQAIR ERQLQRLESA AALGNGGGLE AEHYSPFGRS IFAAAPLGEH GMALGDYFLG PGLDALMQQL AESDAGRQGT
201: PPAKKDAVEA LPTVEVVGGC NEEDAASCAV CLEDYASGER ARELPCRHRF HSQCIVPWLD MHSSCPVCRF QLPADDDPKS SCGSGSGSSS TTTTYVTYVS
301: AEVNDNVDGH GNESGDEAAG NAAVERQDGD VEGEGNASRL PASIQWLNSL FSPQATSPSS TSTSTSGGSS RHFED

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.