Factsheet for Zm00001d008237_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040445_P001	Maize	nucleus	90.54	91.33
TraesCS3D01G192700.1	Wheat	cytosol	59.89	56.79
TraesCS3A01G189200.1	Wheat	cytosol	60.46	56.27
TraesCS3B01G218400.1	Wheat	cytosol	59.89	56.18
HORVU3Hr1G039220.1	Barley	cytosol	60.17	55.7
Os01t0276600-01	Rice	nucleus	45.27	48.02
Zm00001d047560_P001	Maize	cytosol	36.96	41.75
GSMUA_Achr6P08590_001	Banana	nucleus	33.52	39.93
GSMUA_Achr9P05060_001	Banana	nucleus	21.2	39.78
GSMUA_Achr7P18340_001	Banana	nucleus	33.52	39.0
GSMUA_Achr5P07680_001	Banana	nucleus	32.95	38.59
GSMUA_Achr10P...	Banana	nucleus	30.37	34.98
Zm00001d010635_P001	Maize	nucleus	29.8	33.33
Zm00001d013005_P002	Maize	nucleus	34.1	32.08
Zm00001d038528_P001	Maize	cytosol	27.79	29.13
Zm00001d047476_P001	Maize	mitochondrion	23.21	27.74
Zm00001d045625_P001	Maize	cytosol	23.78	26.77
Zm00001d028590_P001	Maize	plastid	18.91	23.74
Zm00001d047824_P001	Maize	plastid	18.62	23.38
Zm00001d032646_P001	Maize	cytosol	24.64	22.93
Zm00001d052154_P001	Maize	mitochondrion	20.63	22.64
Zm00001d035677_P001	Maize	plastid	22.35	22.41
Zm00001d018190_P001	Maize	mitochondrion	21.2	22.22
Zm00001d043183_P001	Maize	plastid	20.63	22.15
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	24.36	22.08
Zm00001d012564_P001	Maize	mitochondrion	21.49	21.68
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	20.63	21.18
Zm00001d031273_P001	Maize	cytosol, plastid	16.91	20.42
Zm00001d011076_P001	Maize	plastid	22.64	20.41
Zm00001d051736_P001	Maize	cytosol	17.77	18.79
Zm00001d046663_P001	Maize	cytosol	13.75	16.11
Zm00001d053704_P001	Maize	cytosol	16.05	15.73

Protein Annotations

EMBL:BT053897	EMBL:EU957247	EnsemblPlants:Zm00001d008237_P001	EnsemblPlants:Zm00001d008237_T001	EnsemblPlantsGene:Zm00001d008237	EntrezGene:100281612
Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576
PANTHER:PTHR44576:SF5	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:AQK89280.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000182BF21	UniProt:B6SWY2	MapMan:35.1	:

Description

RING/U-box superfamily protein

Coordinates

chr8:-:2224750..2226261

Molecular Weight (calculated)

36927.4 Da

IEP (calculated)

4.630

GRAVY (calculated)

-0.512

Length

349 amino acids

Sequence
(BLAST)

001: MAEQAGAGRY WCHMCAAVVS PAEGEAEVKC PHCHSGFLEE METVRGTPAA DDGDGDGAVA QVYPGADRPS SIWAHAILST VDSSVRRRRN RRQTEAAGDV
101: YDGNDPEFAL RRRRVTAFLR LLHELRDRQL QRLEAAAGVA LEGDQLTPFG RSLFIGAAGG GEHGVALGDY FLGPSLDALV QQLAENDAGR HGTPPAKKEA
201: VEAMPTVEIA GGNGNDDDTA SCPVCLEDYA AGERAREMPC RHRFHSNCIV PWLEMHSSCP VCRFQLPATD DKGSCSSGDG GFVSVDADGE GNDNGGGDGR
301: ASIPGNAEPA EAEENGSRLP PSLQWLNSLF SPSAQSSGSG SGSSHHWEN

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.