Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P18340_001 | Banana | nucleus | 62.46 | 61.0 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 30.38 | 47.85 |
| GSMUA_Achr11P... | Banana | nucleus | 42.66 | 46.3 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 43.34 | 42.62 |
| GSMUA_Achr10P... | Banana | nucleus | 44.03 | 42.57 |
| Os03t0324900-01 | Rice | cytosol | 38.57 | 35.31 |
| Zm00001d047560_P001 | Maize | cytosol | 36.52 | 34.63 |
| KXG39475 | Sorghum | cytosol | 36.86 | 33.64 |
| Zm00001d040445_P001 | Maize | nucleus | 39.59 | 33.53 |
| Zm00001d008237_P001 | Maize | nucleus | 39.93 | 33.52 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 21.5 | 32.98 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 35.15 | 31.79 |
| EES00577 | Sorghum | nucleus | 38.57 | 31.48 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 39.25 | 31.25 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 39.93 | 31.2 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 36.52 | 31.01 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 39.25 | 30.91 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 23.89 | 30.3 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 38.91 | 30.24 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 35.84 | 30.17 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 35.84 | 30.0 |
| Os01t0276600-01 | Rice | nucleus | 32.76 | 29.18 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 23.55 | 28.05 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 24.57 | 27.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.89 | 27.13 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 29.01 | 26.9 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.01 | 25.22 |
| GSMUA_Achr11P... | Banana | mitochondrion | 25.6 | 25.08 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 29.69 | 24.79 |
| GSMUA_Achr10P... | Banana | nucleus | 22.87 | 23.76 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 26.28 | 23.4 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 27.3 | 22.79 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 25.26 | 21.51 |
| GSMUA_Achr10P... | Banana | mitochondrion | 28.67 | 20.9 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 25.26 | 20.44 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 18.43 | 13.04 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 17.41 | 12.88 |
| GSMUA_Achr11P... | Banana | cytosol | 21.84 | 8.83 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 15.02 | 8.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P08590_001 | EnsemblPlants:GSMUA_Achr6T08590_001 | EnsemblPlantsGene:GSMUA_Achr6G08590_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF4 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029502B2 | UniProt:M0T5A8 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative E3 ubiquitin-protein ligase RING1-like [Source:GMGC_GENE;Acc:GSMUA_Achr6G08590_001]
Coordinates
chr6:+:5713759..5717135
Molecular Weight (calculated)
31965.7 Da
IEP (calculated)
5.363
GRAVY (calculated)
-0.358
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESEAIAAR YWCHMCSQLV SPIVEMELKC PHCNGGFVEE MDARGDMDDQ ALSLENSDPD GDRQVETIRR RRRRTSAILH LLHSLILINP FTDPIILQGS
101: SDANQLLSHS SSTTGVSPGD YFLGPGLDLL LQRLAESETS RYGTPPALKE AVDAMPTVKI EKNTSCSICL EDLEVGDEGR EMPCKHTFHS GCILPWLDLH
201: SSCPVCRFQM PADESKVVPS AGGSVSREGV GGGESLPWPS HRLFSFPGSQ SSSSSSVSSP PSSERERERY TTRTIGNLCT VRVHAVSSMI NKT
101: SDANQLLSHS SSTTGVSPGD YFLGPGLDLL LQRLAESETS RYGTPPALKE AVDAMPTVKI EKNTSCSICL EDLEVGDEGR EMPCKHTFHS GCILPWLDLH
201: SSCPVCRFQM PADESKVVPS AGGSVSREGV GGGESLPWPS HRLFSFPGSQ SSSSSSVSSP PSSERERERY TTRTIGNLCT VRVHAVSSMI NKT
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.