Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G129800.1 | Wheat | cytosol | 88.41 | 94.14 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 92.75 | 91.43 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 91.59 | 90.8 |
| Os03t0324900-01 | Rice | cytosol | 60.87 | 65.62 |
| Zm00001d047560_P001 | Maize | cytosol | 56.52 | 63.11 |
| KXG39475 | Sorghum | cytosol | 57.1 | 61.37 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 20.87 | 38.71 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 32.75 | 37.67 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 31.01 | 36.52 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 30.43 | 35.23 |
| GSMUA_Achr10P... | Banana | nucleus | 29.86 | 33.99 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 35.65 | 32.63 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 32.75 | 28.39 |
| HORVU1Hr1G068950.2 | Barley | golgi | 31.3 | 27.98 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 22.61 | 26.99 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 24.35 | 23.53 |
| HORVU1Hr1G043220.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 24.06 | 22.62 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 13.91 | 21.72 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 17.68 | 19.24 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 19.42 | 19.03 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 21.74 | 18.7 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 16.81 | 17.42 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 19.42 | 17.09 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 18.55 | 16.54 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 17.68 | 16.49 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 16.23 | 15.38 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 14.49 | 13.05 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G051610.2 | EnsemblPlantsGene:HORVU4Hr1G051610 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF2 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B46CB26 | UniProt:A0A287P0Z4 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr4H:-:423904611..423906139
Molecular Weight (calculated)
36504.6 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.408
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: GDSVPNFLYA ALHRGDRNSQ EKDMAEEPGA TSRYYCHMCS VIVSPELGVE EVKCPHCRSG FVEEMADGRR SSNAVGDRGT AAGAGPDDAG ARSELAVPPW
101: PPILMDLLGV SYGLDGGDLA ALARRQYRHL AFLQLLNALQ EGDADADGDA PDSGLERLVL VSPADAHAMH MPERGASNGA AAARGPGLTL GELILGPGLD
201: LLLEYLAETD PSRQGTLPAK MEAVAALPTV KISEAATCPV CLDEFAAGGE AKEMPCKHRF HDMCILPWLE THSSCPVCRY QLPTDENTEP AGNGADETAD
301: ESNGNARRDV EGDSDGGSSG GRRWLARPFG RLFSRRSNGS SSSSR
101: PPILMDLLGV SYGLDGGDLA ALARRQYRHL AFLQLLNALQ EGDADADGDA PDSGLERLVL VSPADAHAMH MPERGASNGA AAARGPGLTL GELILGPGLD
201: LLLEYLAETD PSRQGTLPAK MEAVAALPTV KISEAATCPV CLDEFAAGGE AKEMPCKHRF HDMCILPWLE THSSCPVCRY QLPTDENTEP AGNGADETAD
301: ESNGNARRDV EGDSDGGSSG GRRWLARPFG RLFSRRSNGS SSSSR
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.