CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047560_P001	Maize	cytosol	89.41	92.88
Os03t0324900-01	Rice	cytosol	63.24	63.44
TraesCS4A01G129800.1	Wheat	cytosol	61.37	60.8
TraesCS4B01G174800.1	Wheat	cytosol	62.31	57.14
HORVU4Hr1G051610.2	Barley	cytosol	61.37	57.1
TraesCS4D01G176700.1	Wheat	cytosol	61.06	56.32
GSMUA_Achr7P18340_001	Banana	nucleus	35.83	38.33
GSMUA_Achr9P05060_001	Banana	nucleus	22.12	38.17
GSMUA_Achr6P08590_001	Banana	nucleus	33.64	36.86
GSMUA_Achr5P07680_001	Banana	nucleus	33.64	36.24
EES00577	Sorghum	nucleus	39.25	35.1
GSMUA_Achr10P...	Banana	nucleus	32.09	33.99
KXG37275	Sorghum	nucleus	36.14	30.29
EER92269	Sorghum	nucleus	24.3	27.37
KXG22238	Sorghum	plastid	32.71	26.99
EER89027	Sorghum	nucleus	23.68	23.68
EER95109	Sorghum	plastid	20.25	23.64
KXG33564	Sorghum	mitochondrion	20.87	22.19
EES14331	Sorghum	plastid	17.76	19.45
EES17560	Sorghum	plastid	23.99	18.64
EER90075	Sorghum	nucleus	17.45	18.48
OQU85475	Sorghum	cytosol	18.07	18.12
EER89401	Sorghum	mitochondrion, nucleus	18.69	17.96
KXG31176	Sorghum	plastid	18.07	16.29
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	18.38	15.25

Protein Annotations

EnsemblPlants:KXG39475	EnsemblPlantsGene:SORBI_3001G387000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
ProteinID:KXG39475	ProteinID:KXG39475.1	ProteinID:KXG39476.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002207060	UniProt:A0A1B6QNH6	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:67444796..67446712

Molecular Weight (calculated)

34065.0 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.380

Length

321 amino acids

Sequence
(BLAST)

001: MEEESGAASR YYCHMCSLII RPELGIEELK CPHCHTGFVE EMAGDRRGSD GAAIRGRAPA DEASFNTSDA ALEREVSLWA PVLMDFIAAS SGRHGLDGGG
101: GGDLAALARR QYRNIALLQL LNALQEGDAD GGRERVVLMS PADARAMLMG QERRDGDARA ALGPGGLTLG DLFLGPGLDL LLEYLAETDP SRQGTPPARK
201: EDVAALPMVR VREAFTCPVC LDEVAGGGEA REMPCSHRFH DQCILPWLEM HSSCPVCRHQ LPTEEPAAEA IGSGRGAGDE SSGNARGGDG GNGGGRRHWF
301: SWPFGGLFSQ RSNGNSSSSS S

Best Arabidopsis Sequence Match ( AT1G55530.3 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.