CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052154_P001	Maize	mitochondrion	76.97	86.16
Zm00001d018190_P001	Maize	mitochondrion	76.97	82.28
Os02t0767600-00	Rice	mitochondrion	65.73	71.34
TraesCS6D01G309800.1	Wheat	mitochondrion	62.08	69.5
TraesCS6A01G330700.1	Wheat	mitochondrion	61.8	67.48
TraesCS6B01G361600.1	Wheat	mitochondrion	60.11	63.5
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	59.27	63.36
GSMUA_Achr7P13060_001	Banana	mitochondrion	41.57	60.16
EER89401	Sorghum	mitochondrion, nucleus	43.54	46.41
VIT_18s0001g03270.t01	Wine grape	nucleus	31.74	33.93
CDX74533	Canola	cytosol	27.81	33.9
PGSC0003DMT400002370	Potato	cytosol	30.34	33.44
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	24.44	33.33
Solyc11g012950.1.1	Tomato	cytosol	31.18	33.33
KRH64713	Soybean	nucleus	30.62	30.97
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	28.09	30.77
CDY01669	Canola	plastid	27.81	30.65
EER92269	Sorghum	nucleus	23.88	29.82
AT1G60360.1	Thale cress	nucleus	26.97	29.36
PGSC0003DMT400061055	Potato	extracellular	22.19	26.51
Solyc01g104260.2.1	Tomato	mitochondrion	22.19	26.33
KRH10441	Soybean	mitochondrion	22.47	24.92
EER95109	Sorghum	plastid	19.1	24.73
KRH44018	Soybean	mitochondrion	21.91	24.61
KXG33564	Sorghum	mitochondrion	20.79	24.5
EER89027	Sorghum	nucleus	21.35	23.68
VIT_12s0034g01390.t01	Wine grape	mitochondrion	26.12	20.62
EES17560	Sorghum	plastid	21.91	18.89
EES00577	Sorghum	nucleus	18.54	18.38
KXG39475	Sorghum	cytosol	16.29	18.07
KXG22238	Sorghum	plastid	17.7	16.2
KXG37275	Sorghum	nucleus	17.42	16.19
EER90075	Sorghum	nucleus	13.76	16.17
EES14331	Sorghum	plastid	12.36	15.02
OQU85475	Sorghum	cytosol	13.48	15.0
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	11.8	10.85

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A194YSM1	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KXG31176
ProteinID:KXG31176	ProteinID:KXG31176.1	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290
PANTHER:PTHR44290:SF3	SMART:SM00184	EnsemblPlantsGene:SORBI_3004G310400	SUPFAM:SSF57850	UniParc:UPI0007F288FD	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:64715319..64717588

Molecular Weight (calculated)

39423.2 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.747

Length

356 amino acids

Sequence
(BLAST)

001: MQTSRGHPPR ATAAQDATST NKPTHPTQGT EPTTVPPTMS ATTPAPARHR TCRMYWCYQC GRALRIISYP STDVFCPRCF GRFLHEIDPT PARPAFPPPH
101: FLPHPFHPQH QYDGHPRRWV IYGGEPTTTT TVPGRAFRQP ATSQAPATPP APAPVRRRVP SPPPVPRRPS TPPAIDPGNY FTGPNLNNLI EEITQNDRPG
201: PAPAPSSAID SLPTVRITGA HLSDGSQCPV CKEDFELGEA ARQLPCKHVY HSDCIVPWLR LHNSCPVCRY QLPGAGSNGG GSLQAAPRGG SNGNNRNRER
301: EREPATLVRW GPFSWLFPPR EMDDPDDHAW EHERRGRHDA ADAGAFYAWW RSLFLI

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.