Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G08139.1 | KXG37587 | AT4G14640.1 | 17360592 |
AT5G08139.1 | KXG37588 | AT4G14640.1 | 17360592 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d053704_P001 | Maize | cytosol | 71.32 | 77.53 |
Os02t0191500-01 | Rice | nucleus | 41.86 | 43.2 |
EES14331 | Sorghum | plastid | 16.8 | 22.18 |
TraesCS6D01G160300.1 | Wheat | nucleus | 19.12 | 21.26 |
EER95109 | Sorghum | plastid | 14.99 | 21.09 |
HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 20.16 | 21.08 |
EER90075 | Sorghum | nucleus | 16.02 | 20.46 |
OQU85475 | Sorghum | cytosol | 16.28 | 19.69 |
KRH56750 | Soybean | cytosol | 17.05 | 19.3 |
CDX69496 | Canola | cytosol | 14.21 | 19.1 |
CDX78323 | Canola | cytosol | 14.21 | 19.1 |
Bra008671.1-P | Field mustard | nucleus | 13.95 | 18.82 |
TraesCS6B01G198800.1 | Wheat | nucleus | 19.38 | 18.7 |
KRH03189 | Soybean | nucleus | 17.05 | 18.59 |
KXG39475 | Sorghum | cytosol | 15.25 | 18.38 |
Bra005970.1-P | Field mustard | cytosol | 13.7 | 18.28 |
EER92269 | Sorghum | nucleus | 13.44 | 18.25 |
CDY69134 | Canola | cytosol | 13.7 | 18.21 |
KRH18313 | Soybean | nucleus | 17.31 | 17.91 |
KXG37275 | Sorghum | nucleus | 17.31 | 17.49 |
CDY34721 | Canola | cytosol | 17.57 | 17.44 |
CDY34722 | Canola | cytosol | 17.57 | 17.44 |
Bra021467.1-P | Field mustard | nucleus | 17.57 | 17.44 |
KRG93748 | Soybean | nucleus, plastid | 17.05 | 17.37 |
Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 17.57 | 17.13 |
Solyc02g089410.2.1 | Tomato | nucleus | 14.47 | 17.13 |
CDY26465 | Canola | cytosol | 14.99 | 17.11 |
EES00577 | Sorghum | nucleus | 15.76 | 16.99 |
CDX69973 | Canola | cytosol | 15.76 | 16.94 |
PGSC0003DMT400068309 | Potato | cytosol | 17.31 | 16.83 |
EER89027 | Sorghum | nucleus | 13.95 | 16.82 |
CDX90972 | Canola | cytosol | 14.47 | 16.72 |
CDY21513 | Canola | cytosol | 15.25 | 16.57 |
VIT_17s0000g04730.t01 | Wine grape | nucleus | 18.6 | 16.4 |
VIT_14s0083g00710.t01 | Wine grape | nucleus | 16.54 | 16.37 |
CDX85531 | Canola | cytosol | 14.47 | 16.33 |
KXG33564 | Sorghum | mitochondrion | 12.66 | 16.23 |
PGSC0003DMT400003515 | Potato | nucleus | 15.5 | 16.17 |
GSMUA_Achr8P24510_001 | Banana | cytosol | 16.54 | 16.16 |
Bra009323.1-P | Field mustard | cytosol | 15.76 | 16.09 |
AT5G15820.1 | Thale cress | cytosol | 14.21 | 15.8 |
AT5G08139.1 | Thale cress | cytosol | 14.99 | 15.43 |
PGSC0003DMT400063293 | Potato | nucleus | 17.05 | 15.28 |
EER89401 | Sorghum | mitochondrion, nucleus | 13.18 | 15.27 |
Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 15.5 | 15.11 |
AT3G02340.2 | Thale cress | cytosol | 15.76 | 14.91 |
EES17560 | Sorghum | plastid | 15.76 | 14.77 |
CDY02194 | Canola | peroxisome | 14.99 | 14.57 |
CDY51628 | Canola | peroxisome | 15.25 | 14.53 |
KXG22238 | Sorghum | plastid | 14.47 | 14.4 |
Bra013006.1-P | Field mustard | nucleus | 15.25 | 14.15 |
AT5G60820.1 | Thale cress | cytosol | 15.25 | 14.08 |
Solyc03g114680.2.1 | Tomato | nucleus | 17.83 | 13.86 |
GSMUA_Achr3P06300_001 | Banana | cytosol | 17.57 | 13.03 |
KXG31176 | Sorghum | plastid | 10.85 | 11.8 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8079449 | UniProt:A0A1Z5RLJ5 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 | EnsemblPlants:OQU84547 |
ProteinID:OQU84547 | ProteinID:OQU84547.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 |
SMART:SM00744 | EnsemblPlantsGene:SORBI_3004G074600 | SUPFAM:SSF57850 | UniParc:UPI0001A856E0 | RefSeq:XP_002451697.1 | InterPro:Znf_RING |
InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:6043912..6047017
Molecular Weight (calculated)
40318.8 Da
IEP (calculated)
3.807
GRAVY (calculated)
-0.367
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGFTGDDPF GFDYDFGDDG DNGPFCYDPF EDYGVGGDEG EGLIGGPFAL DYGDGGEYCI SGFALRDGDE DDGGHVLVGE EQGQARLSSH DEPILETLGR
101: SFDSDGGLSQ FYPHLVSALE LVEDTSEEEE EEAMISGNAR GGGGSEFERG AVVEEPADDD DGGIGLVLGR LGGLTLDPRP VVGGFEGLVD AVEEATSEDD
201: MGEVGHVGGL MLSGFDLVAP QAVTRPFRMV VGGEDTDSDD ADWNLVDVLA GRVGEAARRL PASRAVVDGL PEVALSDEEA SHGCAVCKDG IAAGQSVLRL
301: PCRHYFHGEC IRPWLAIRNT CPVCRFELPT GDADHDWRRS RTGVVSVAQQ SAPAQSGGPG AGSGSTVGAG DDATECSGEN RPEQGTS
101: SFDSDGGLSQ FYPHLVSALE LVEDTSEEEE EEAMISGNAR GGGGSEFERG AVVEEPADDD DGGIGLVLGR LGGLTLDPRP VVGGFEGLVD AVEEATSEDD
201: MGEVGHVGGL MLSGFDLVAP QAVTRPFRMV VGGEDTDSDD ADWNLVDVLA GRVGEAARRL PASRAVVDGL PEVALSDEEA SHGCAVCKDG IAAGQSVLRL
301: PCRHYFHGEC IRPWLAIRNT CPVCRFELPT GDADHDWRRS RTGVVSVAQQ SAPAQSGGPG AGSGSTVGAG DDATECSGEN RPEQGTS
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.