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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 2
  • mitochondrion 1
  • cytoskeleton 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
KXG37587
KXG37588

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d053704_P001 Maize cytosol 71.32 77.53
Os02t0191500-01 Rice nucleus 41.86 43.2
EES14331 Sorghum plastid 16.8 22.18
TraesCS6D01G160300.1 Wheat nucleus 19.12 21.26
EER95109 Sorghum plastid 14.99 21.09
HORVU6Hr1G034800.1 Barley cytosol, nucleus 20.16 21.08
EER90075 Sorghum nucleus 16.02 20.46
OQU85475 Sorghum cytosol 16.28 19.69
KRH56750 Soybean cytosol 17.05 19.3
CDX69496 Canola cytosol 14.21 19.1
CDX78323 Canola cytosol 14.21 19.1
Bra008671.1-P Field mustard nucleus 13.95 18.82
TraesCS6B01G198800.1 Wheat nucleus 19.38 18.7
KRH03189 Soybean nucleus 17.05 18.59
KXG39475 Sorghum cytosol 15.25 18.38
Bra005970.1-P Field mustard cytosol 13.7 18.28
EER92269 Sorghum nucleus 13.44 18.25
CDY69134 Canola cytosol 13.7 18.21
KRH18313 Soybean nucleus 17.31 17.91
KXG37275 Sorghum nucleus 17.31 17.49
CDY34721 Canola cytosol 17.57 17.44
CDY34722 Canola cytosol 17.57 17.44
Bra021467.1-P Field mustard nucleus 17.57 17.44
KRG93748 Soybean nucleus, plastid 17.05 17.37
Solyc02g065650.1.1 Tomato cytosol, nucleus, plastid 17.57 17.13
Solyc02g089410.2.1 Tomato nucleus 14.47 17.13
CDY26465 Canola cytosol 14.99 17.11
EES00577 Sorghum nucleus 15.76 16.99
CDX69973 Canola cytosol 15.76 16.94
PGSC0003DMT400068309 Potato cytosol 17.31 16.83
EER89027 Sorghum nucleus 13.95 16.82
CDX90972 Canola cytosol 14.47 16.72
CDY21513 Canola cytosol 15.25 16.57
VIT_17s0000g04730.t01 Wine grape nucleus 18.6 16.4
VIT_14s0083g00710.t01 Wine grape nucleus 16.54 16.37
CDX85531 Canola cytosol 14.47 16.33
KXG33564 Sorghum mitochondrion 12.66 16.23
PGSC0003DMT400003515 Potato nucleus 15.5 16.17
GSMUA_Achr8P24510_001 Banana cytosol 16.54 16.16
Bra009323.1-P Field mustard cytosol 15.76 16.09
AT5G15820.1 Thale cress cytosol 14.21 15.8
AT5G08139.1 Thale cress cytosol 14.99 15.43
PGSC0003DMT400063293 Potato nucleus 17.05 15.28
EER89401 Sorghum mitochondrion, nucleus 13.18 15.27
Bra023539.1-P Field mustard cytoskeleton, cytosol, nucleus 15.5 15.11
AT3G02340.2 Thale cress cytosol 15.76 14.91
EES17560 Sorghum plastid 15.76 14.77
CDY02194 Canola peroxisome 14.99 14.57
CDY51628 Canola peroxisome 15.25 14.53
KXG22238 Sorghum plastid 14.47 14.4
Bra013006.1-P Field mustard nucleus 15.25 14.15
AT5G60820.1 Thale cress cytosol 15.25 14.08
Solyc03g114680.2.1 Tomato nucleus 17.83 13.86
GSMUA_Achr3P06300_001 Banana cytosol 17.57 13.03
KXG31176 Sorghum plastid 10.85 11.8
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1EntrezGene:8079449UniProt:A0A1Z5RLJ5GO:GO:0003674GO:GO:0005488
GO:GO:0008270GO:GO:0046872InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083EnsemblPlants:OQU84547
ProteinID:OQU84547ProteinID:OQU84547.1PFAM:PF13639PFscan:PS50089PANTHER:PTHR44679SMART:SM00184
SMART:SM00744EnsemblPlantsGene:SORBI_3004G074600SUPFAM:SSF57850UniParc:UPI0001A856E0RefSeq:XP_002451697.1InterPro:Znf_RING
InterPro:Znf_RING-CHInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
hypothetical protein
Coordinates
chr4:+:6043912..6047017
Molecular Weight (calculated)
40318.8 Da
IEP (calculated)
3.807
GRAVY (calculated)
-0.367
Length
387 amino acids
Sequence
(BLAST)
001: MAGFTGDDPF GFDYDFGDDG DNGPFCYDPF EDYGVGGDEG EGLIGGPFAL DYGDGGEYCI SGFALRDGDE DDGGHVLVGE EQGQARLSSH DEPILETLGR
101: SFDSDGGLSQ FYPHLVSALE LVEDTSEEEE EEAMISGNAR GGGGSEFERG AVVEEPADDD DGGIGLVLGR LGGLTLDPRP VVGGFEGLVD AVEEATSEDD
201: MGEVGHVGGL MLSGFDLVAP QAVTRPFRMV VGGEDTDSDD ADWNLVDVLA GRVGEAARRL PASRAVVDGL PEVALSDEEA SHGCAVCKDG IAAGQSVLRL
301: PCRHYFHGEC IRPWLAIRNT CPVCRFELPT GDADHDWRRS RTGVVSVAQQ SAPAQSGGPG AGSGSTVGAG DDATECSGEN RPEQGTS
Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.