Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G198800.1 | Wheat | nucleus | 94.54 | 82.04 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 78.45 | 73.78 |
| Os02t0191500-01 | Rice | nucleus | 22.7 | 21.07 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.52 | 20.07 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 16.67 | 20.07 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 18.97 | 20.0 |
| TraesCS4D01G209500.1 | Wheat | plastid | 16.09 | 20.0 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 21.26 | 19.12 |
| Zm00001d053704_P001 | Maize | cytosol | 19.54 | 19.1 |
| Bra008671.1-P | Field mustard | nucleus | 15.52 | 18.82 |
| CDX69496 | Canola | cytosol | 15.52 | 18.75 |
| CDX78323 | Canola | cytosol | 15.23 | 18.4 |
| Bra005970.1-P | Field mustard | cytosol | 14.94 | 17.93 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.38 | 17.48 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 17.24 | 17.24 |
| CDY69134 | Canola | cytosol | 14.37 | 17.18 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 16.09 | 16.87 |
| CDY26465 | Canola | cytosol | 16.38 | 16.81 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 18.39 | 16.58 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 18.39 | 16.16 |
| KRH56750 | Soybean | cytosol | 15.8 | 16.08 |
| KRH03189 | Soybean | nucleus | 16.38 | 16.06 |
| Solyc02g089410.2.1 | Tomato | nucleus | 14.94 | 15.9 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 15.52 | 15.79 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 16.67 | 15.68 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 14.37 | 15.62 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 17.82 | 15.42 |
| KRH18313 | Soybean | nucleus | 16.38 | 15.24 |
| PGSC0003DMT400003515 | Potato | nucleus | 16.09 | 15.09 |
| AT5G15820.1 | Thale cress | cytosol | 14.94 | 14.94 |
| CDX69973 | Canola | cytosol | 15.23 | 14.72 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 15.52 | 14.67 |
| CDY21513 | Canola | cytosol | 14.94 | 14.61 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 18.39 | 14.58 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 16.38 | 14.58 |
| CDY34722 | Canola | cytosol | 16.09 | 14.36 |
| PGSC0003DMT400063293 | Potato | nucleus | 17.82 | 14.35 |
| KRG93748 | Soybean | nucleus, plastid | 15.52 | 14.21 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 12.93 | 14.15 |
| CDY34721 | Canola | cytosol | 15.8 | 14.1 |
| Bra009323.1-P | Field mustard | cytosol | 15.23 | 13.98 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 16.09 | 13.86 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 15.8 | 13.85 |
| Bra021467.1-P | Field mustard | nucleus | 15.52 | 13.85 |
| PGSC0003DMT400068309 | Potato | cytosol | 15.52 | 13.57 |
| CDX85531 | Canola | cytosol | 13.22 | 13.41 |
| CDY02194 | Canola | peroxisome | 15.23 | 13.32 |
| CDX90972 | Canola | cytosol | 12.64 | 13.13 |
| CDY51628 | Canola | peroxisome | 15.23 | 13.05 |
| Solyc03g114680.2.1 | Tomato | nucleus | 18.68 | 13.05 |
| AT5G08139.1 | Thale cress | cytosol | 14.08 | 13.03 |
| AT3G02340.2 | Thale cress | cytosol | 15.23 | 12.96 |
| AT5G60820.1 | Thale cress | cytosol | 15.52 | 12.89 |
| Bra013006.1-P | Field mustard | nucleus | 15.23 | 12.71 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 18.39 | 12.6 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 13.51 | 11.84 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 16.95 | 11.3 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G160300.1 | EnsemblPlantsGene:TraesCS6D01G160300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:138385527..138390292
Molecular Weight (calculated)
37312.7 Da
IEP (calculated)
3.563
GRAVY (calculated)
-0.890
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDSDGEGF CANPFEDDSD GGNSCDYRCC CDDDDEGEWS CGAPCDEEDD DDSNGEEICR DPRDNVVVDD DEDEGEVEEA LCHDDDEGES DGSLCDEDAE
101: GEQLSDDDEC EGKGGGFGDD RCDDEDEGKP DGESEDFCEN PSNHDEDVGA EVLSRGGGGG FRGGELFVSR FLFSDASDIS DSDHSDSEVE EAGGGEGLTP
201: SGFDQTPSPG AFRMAVGVED SDSDTVSTDS DYEDDYEFLK RPASRQAVEG LPEMILSEEE ATCGCAVCKD VFASGQRVVF LPCKHYFHGD CILPWLAMRS
301: TCPVCRYQLP TDDTGSGQRQ SHQLRVLLPV DPQGASQQSG GEATTRSG
101: GEQLSDDDEC EGKGGGFGDD RCDDEDEGKP DGESEDFCEN PSNHDEDVGA EVLSRGGGGG FRGGELFVSR FLFSDASDIS DSDHSDSEVE EAGGGEGLTP
201: SGFDQTPSPG AFRMAVGVED SDSDTVSTDS DYEDDYEFLK RPASRQAVEG LPEMILSEEE ATCGCAVCKD VFASGQRVVF LPCKHYFHGD CILPWLAMRS
301: TCPVCRYQLP TDDTGSGQRQ SHQLRVLLPV DPQGASQQSG GEATTRSG
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.