Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra039723.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | Bra039723.1-P | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69973 | Canola | cytosol | 93.4 | 98.33 |
| CDY21513 | Canola | cytosol | 86.28 | 91.85 |
| Bra005970.1-P | Field mustard | cytosol | 50.4 | 65.86 |
| AT5G08139.1 | Thale cress | cytosol | 60.95 | 61.44 |
| Bra013006.1-P | Field mustard | nucleus | 43.01 | 39.09 |
| KRH56750 | Soybean | cytosol | 32.19 | 35.67 |
| KRH03189 | Soybean | nucleus | 32.19 | 34.37 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 10.82 | 33.06 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 34.83 | 30.07 |
| PGSC0003DMT400063293 | Potato | nucleus | 32.19 | 28.24 |
| Solyc03g114680.2.1 | Tomato | nucleus | 32.45 | 24.7 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 25.59 | 24.49 |
| Bra014684.1-P | Field mustard | nucleus | 11.35 | 22.4 |
| Bra004589.1-P | Field mustard | nucleus | 14.25 | 22.13 |
| Bra008671.1-P | Field mustard | nucleus | 16.62 | 21.95 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 17.41 | 21.5 |
| Bra001767.1-P | Field mustard | nucleus | 12.14 | 21.5 |
| Bra021467.1-P | Field mustard | nucleus | 21.64 | 21.03 |
| Bra030136.1-P | Field mustard | cytosol | 13.19 | 20.66 |
| TraesCS7D01G246300.1 | Wheat | plastid | 14.25 | 20.07 |
| OQU85475 | Sorghum | cytosol | 16.89 | 20.0 |
| Os08t0487500-01 | Rice | plastid | 14.25 | 19.93 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.09 | 19.87 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 15.04 | 19.72 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 13.98 | 19.7 |
| Zm00001d051736_P001 | Maize | cytosol | 17.15 | 19.7 |
| EES14331 | Sorghum | plastid | 15.04 | 19.45 |
| TraesCS7B01G144100.1 | Wheat | plastid | 13.72 | 19.33 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 15.83 | 19.29 |
| Bra037800.1-P | Field mustard | cytosol | 15.3 | 19.21 |
| Bra011215.1-P | Field mustard | cytosol | 11.61 | 18.97 |
| EER90075 | Sorghum | nucleus | 14.78 | 18.48 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 15.3 | 18.3 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 14.51 | 17.74 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 24.01 | 17.43 |
| Bra019109.1-P | Field mustard | nucleus | 14.78 | 17.39 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 16.62 | 17.31 |
| Zm00001d046663_P001 | Maize | cytosol | 13.46 | 17.11 |
| Bra037999.1-P | Field mustard | nucleus | 12.93 | 16.9 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.68 | 16.88 |
| Bra027436.1-P | Field mustard | nucleus | 12.93 | 15.86 |
| Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 15.57 | 15.82 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.09 | 15.76 |
| Bra038246.1-P | Field mustard | nucleus | 13.46 | 15.69 |
| Bra002823.1-P | Field mustard | nucleus | 14.51 | 15.62 |
| Bra035835.1-P | Field mustard | nucleus | 13.46 | 15.6 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 13.98 | 15.23 |
| Zm00001d053704_P001 | Maize | cytosol | 14.25 | 15.17 |
| Bra030854.1-P | Field mustard | nucleus | 12.4 | 15.06 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 12.93 | 15.03 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 12.93 | 14.85 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 12.93 | 14.8 |
| Bra005020.1-P | Field mustard | nucleus, plastid | 13.19 | 14.66 |
| Bra006709.1-P | Field mustard | plastid | 15.04 | 14.5 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 13.98 | 14.32 |
| Bra026444.1-P | Field mustard | nucleus | 13.98 | 14.29 |
| Bra000143.1-P | Field mustard | nucleus | 13.72 | 13.87 |
| Bra014266.1-P | Field mustard | nucleus | 16.09 | 13.83 |
| Bra037109.1-P | Field mustard | nucleus | 12.14 | 13.77 |
| Bra020313.1-P | Field mustard | plastid | 13.98 | 13.62 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 14.25 | 13.47 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 11.35 | 13.23 |
| Bra002559.1-P | Field mustard | plastid | 13.72 | 13.1 |
| Os02t0191500-01 | Rice | nucleus | 12.93 | 13.07 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 12.93 | 12.79 |
| Bra028935.1-P | Field mustard | nucleus | 14.78 | 9.86 |
Protein Annotations
| EnsemblPlants:Bra009323.1 | EnsemblPlants:Bra009323.1-P | EnsemblPlantsGene:Bra009323 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002543D46 | UniProt:M4CYM6 | MapMan:35.1 |
Description
AT5G08139 (E=1e-054) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA10:+:16169919..16171058
Molecular Weight (calculated)
42172.7 Da
IEP (calculated)
3.654
GRAVY (calculated)
-0.573
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSHQRVEQ SQVTLPRDDD NDGTVSRDVI VGNCDVVVEL GLGSGTVFIE NIDSDVVDVN NLNGFDEPDD DDLELRGIAS MGSQIRLITI ESGSDDDDDH
101: HENEREVWGI DLNDDDDVYD DEDDDDDVNV TIPLCWDSLQ VEDRGVAAEE FDWEEVDGGG GLVDEREILT GFAEIDDGDG DGLEDEREIE ILTGFAEADI
201: DEDTSVSISI SPMISSEGLD TGERTEGAAN LEWEVLLNSH TLEINFDVGN REIFLTGDNE VNINAPEYDM LFEQFSQAGL ANLRRFPPAS RSFIKDLPMV
301: QLDVEKDEGA VCAVCKDEMD VGTEAVGLPC DHKYHTECIV PWLKTRNTCP VCRYELPTDS TDYERRKSQR TTTSSNNIW
101: HENEREVWGI DLNDDDDVYD DEDDDDDVNV TIPLCWDSLQ VEDRGVAAEE FDWEEVDGGG GLVDEREILT GFAEIDDGDG DGLEDEREIE ILTGFAEADI
201: DEDTSVSISI SPMISSEGLD TGERTEGAAN LEWEVLLNSH TLEINFDVGN REIFLTGDNE VNINAPEYDM LFEQFSQAGL ANLRRFPPAS RSFIKDLPMV
301: QLDVEKDEGA VCAVCKDEMD VGTEAVGLPC DHKYHTECIV PWLKTRNTCP VCRYELPTDS TDYERRKSQR TTTSSNNIW
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.