Factsheet for Os08t0487500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0743500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Os03t0743500-02	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G246300.1	Wheat	plastid	70.48	71.0
TraesCS7A01G247700.1	Wheat	cytosol, plastid	70.48	71.0
TraesCS7B01G144100.1	Wheat	plastid	70.11	70.63
Zm00001d031273_P001	Maize	cytosol, plastid	66.79	62.63
EES14331	Sorghum	plastid	67.16	62.12
Os06t0633500-01	Rice	cytosol, nucleus	16.61	36.29
Os02t0727700-01	Rice	cytosol, nucleus, plastid	25.83	22.51
Os03t0271600-01	Rice	plastid	22.14	21.51
Os06t0101300-01	Rice	nucleus	24.72	19.82
Os03t0351800-01	Rice	nucleus	20.3	19.43
KRH56750	Soybean	cytosol	23.99	19.01
Os01t0276600-01	Rice	nucleus	22.51	18.54
Os03t0324900-01	Rice	cytosol	21.77	18.44
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	25.09	18.38
Solyc02g089410.2.1	Tomato	nucleus	21.77	18.04
CDY69134	Canola	cytosol	19.19	17.87
Os05t0110000-01	Rice	mitochondrion	21.4	17.42
KRH18313	Soybean	nucleus	23.99	17.38
CDX78323	Canola	cytosol	18.45	17.36
Bra005970.1-P	Field mustard	cytosol	18.45	17.24
KRH03189	Soybean	nucleus	22.51	17.18
GSMUA_Achr8P24510_001	Banana	cytosol	25.09	17.17
KRG93748	Soybean	nucleus, plastid	23.99	17.11
Os02t0191500-01	Rice	nucleus	23.62	17.07
CDY34722	Canola	cytosol	24.35	16.92
AT5G08139.1	Thale cress	cytosol	23.25	16.76
CDY34721	Canola	cytosol	23.99	16.67
PGSC0003DMT400003515	Potato	nucleus	22.51	16.44
Bra021467.1-P	Field mustard	nucleus	23.62	16.41
Os03t0812200-01	Rice	nucleus	22.14	16.26
AT3G02340.2	Thale cress	cytosol	23.99	15.89
Os05t0488800-01	Rice	nucleus	18.82	15.79
Os05t0495000-00	Rice	mitochondrion	16.61	15.73
CDY02194	Canola	peroxisome	22.88	15.58
VIT_17s0000g04730.t01	Wine grape	nucleus	25.09	15.49
Bra008671.1-P	Field mustard	nucleus	16.24	15.33
CDX69496	Canola	cytosol	16.24	15.28
CDY51628	Canola	peroxisome	22.88	15.27
AT5G15820.1	Thale cress	cytosol	19.56	15.23
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	22.14	15.11
PGSC0003DMT400068309	Potato	cytosol	22.14	15.08
CDX69973	Canola	cytosol	19.93	15.0
Os01t0802000-01	Rice	nucleus	18.08	14.89
AT5G60820.1	Thale cress	cytosol	22.88	14.8
Os01t0972000-01	Rice	nucleus	18.08	14.67
CDY21513	Canola	cytosol	19.19	14.61
CDY26465	Canola	cytosol	18.08	14.45
Bra013006.1-P	Field mustard	nucleus	22.14	14.39
Os02t0767600-00	Rice	mitochondrion	17.34	14.33
CDX90972	Canola	cytosol	17.71	14.33
VIT_14s0083g00710.t01	Wine grape	nucleus	20.66	14.32
Bra009323.1-P	Field mustard	cytosol	19.93	14.25
CDX85531	Canola	cytosol	17.34	13.7
PGSC0003DMT400063293	Potato	nucleus	21.4	13.43
GSMUA_Achr3P06300_001	Banana	cytosol	25.83	13.41
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	17.71	12.09
Solyc03g114680.2.1	Tomato	nucleus	21.4	11.65
Os12t0118700-01	Rice	nucleus	19.19	10.42
Os11t0119200-01	Rice	nucleus	18.82	10.39

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4345891	EMBL:AK066326	ProteinID:BAD09331.1	ProteinID:BAD09411.1
ProteinID:BAF24015.1	ProteinID:BAT05995.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	EMBL:HQ324797	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os08g0487500
EnsemblPlants:Os08t0487500-01	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	UniProt:Q6ZCW1	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000023ADC2	RefSeq:XP_015648067.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0487500-01)

Coordinates

chr8:-:24113051..24114250

Molecular Weight (calculated)

29287.4 Da

IEP (calculated)

3.795

GRAVY (calculated)

-0.375

Length

271 amino acids

Sequence
(BLAST)

001: MASSSLLVRL ASDEMPQTLD ASSSSSCYDA FVPVFHPDPS SGFSAASVVA AADRLRSQFL SVEPDLFHDA LVAPSPDHLG FPDEEEEEEI RWDCLQLDDD
101: DEEEEGVADL RLEASNAAEE FDWEEVASPS GGAGMDQPEP EWEVLADVPP PPPPPADEGF VYTSDRDVYE VLVGEGLFLK SKPPAARSAV EALPSAVVAA
201: GEDGEGEECA VCRDGVAAGE RVKRLPCSHG YHEECIMPWL DVRNSCPLCR FELPTDDPQY ESWKASRAAA A

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.