Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G144100.1 | Wheat | plastid | 96.65 | 96.65 |
| TraesCS7D01G246300.1 | Wheat | plastid | 96.28 | 96.28 |
| Os08t0487500-01 | Rice | plastid | 71.0 | 70.48 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 62.45 | 58.13 |
| EES14331 | Sorghum | plastid | 63.2 | 58.02 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 23.79 | 20.85 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 21.56 | 20.71 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 24.16 | 20.06 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 26.39 | 19.19 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 23.05 | 18.51 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 19.33 | 17.99 |
| KRH56750 | Soybean | cytosol | 22.68 | 17.84 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 21.56 | 17.79 |
| CDX78323 | Canola | cytosol | 18.59 | 17.36 |
| Solyc02g089410.2.1 | Tomato | nucleus | 20.82 | 17.13 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 23.79 | 17.07 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 20.07 | 16.93 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 20.82 | 16.92 |
| Bra005970.1-P | Field mustard | cytosol | 18.22 | 16.9 |
| CDY69134 | Canola | cytosol | 18.22 | 16.84 |
| KRH03189 | Soybean | nucleus | 21.19 | 16.06 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 23.79 | 16.04 |
| PGSC0003DMT400003515 | Potato | nucleus | 21.93 | 15.9 |
| KRH18313 | Soybean | nucleus | 21.93 | 15.78 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 23.05 | 15.66 |
| CDY34722 | Canola | cytosol | 22.3 | 15.38 |
| KRG93748 | Soybean | nucleus, plastid | 21.56 | 15.26 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 24.91 | 15.26 |
| AT5G08139.1 | Thale cress | cytosol | 21.19 | 15.16 |
| CDY34721 | Canola | cytosol | 21.93 | 15.13 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 22.68 | 15.1 |
| Bra008671.1-P | Field mustard | nucleus | 15.99 | 14.98 |
| CDX69496 | Canola | cytosol | 15.99 | 14.93 |
| AT3G02340.2 | Thale cress | cytosol | 22.68 | 14.91 |
| CDY21513 | Canola | cytosol | 19.7 | 14.89 |
| Bra021467.1-P | Field mustard | nucleus | 21.56 | 14.87 |
| CDX69973 | Canola | cytosol | 19.7 | 14.72 |
| AT5G15820.1 | Thale cress | cytosol | 18.96 | 14.66 |
| CDY02194 | Canola | peroxisome | 21.56 | 14.57 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 20.82 | 14.32 |
| CDY26465 | Canola | cytosol | 17.84 | 14.16 |
| Bra009323.1-P | Field mustard | cytosol | 19.7 | 13.98 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 20.45 | 13.85 |
| PGSC0003DMT400068309 | Potato | cytosol | 20.45 | 13.82 |
| CDY51628 | Canola | peroxisome | 20.82 | 13.79 |
| Bra013006.1-P | Field mustard | nucleus | 20.82 | 13.43 |
| AT5G60820.1 | Thale cress | cytosol | 20.82 | 13.37 |
| PGSC0003DMT400063293 | Potato | nucleus | 21.19 | 13.19 |
| CDX90972 | Canola | cytosol | 15.99 | 12.84 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 24.16 | 12.45 |
| CDX85531 | Canola | cytosol | 15.61 | 12.24 |
| Solyc03g114680.2.1 | Tomato | nucleus | 22.3 | 12.05 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.1 | 11.59 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 20.07 | 10.59 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 14.5 | 9.68 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G247700.1 | EnsemblPlantsGene:TraesCS7A01G247700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:228489379..228490268
Molecular Weight (calculated)
29647.2 Da
IEP (calculated)
3.938
GRAVY (calculated)
-0.374
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPYLLHRL TADEIFQTLE ASSSTSSSCY DAFVPVFRPD PSASALSVSA ADRVRSQFLS VQRDLFHDAL VAPRNDDLSF PEENDEEEEA SIRWDCFQLD
101: EEEEPDLPLE ASVPAEEFDW EEVAFASGPS VENPEPDWEM LGDMPPSAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAIVAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EDCILPWLEV RNSCPLCRFE LPTDNPKYET WKAERAMAA
101: EEEEPDLPLE ASVPAEEFDW EEVAFASGPS VENPEPDWEM LGDMPPSAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAIVAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EDCILPWLEV RNSCPLCRFE LPTDNPKYET WKAERAMAA
001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
Arabidopsis Description
CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.