Factsheet for TraesCS4A01G095800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G209100.1	Wheat	plastid	99.64	99.64
TraesCS4D01G209500.1	Wheat	plastid	99.64	99.64
Os03t0271600-01	Rice	plastid	94.29	94.62
EER95109	Sorghum	plastid	91.07	92.73
Zm00001d047824_P001	Maize	plastid	91.43	92.09
Zm00001d028590_P001	Maize	plastid	91.43	92.09
HORVU4Hr1G060130.1	Barley	cytosol	98.93	78.69
GSMUA_Achr7P15040_001	Banana	mitochondrion	55.71	49.37
KRH23103	Soybean	nucleus	53.57	47.77
KRH10229	Soybean	nucleus	52.86	47.13
GSMUA_Achr10P...	Banana	mitochondrion	55.36	45.99
CDY20473	Canola	nucleus, plastid	53.57	44.91
Bra005020.1-P	Field mustard	nucleus, plastid	53.21	43.7
CDX74839	Canola	cytosol, plastid	50.0	43.21
GSMUA_Achr5P07070_001	Banana	nucleus	50.71	43.16
KRH29763	Soybean	nucleus	55.36	42.94
KRG97885	Soybean	mitochondrion	54.64	42.86
KRH24759	Soybean	nucleus	55.0	42.66
KRH30994	Soybean	nucleus	58.93	41.98
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	57.86	41.97
TraesCS1A01G029800.1	Wheat	cytosol	58.57	41.1
CDY53450	Canola	cytosol	47.14	40.99
GSMUA_Achr2P19140_001	Banana	mitochondrion	52.86	40.88
Bra000143.1-P	Field mustard	nucleus	54.64	40.8
CDY07641	Canola	nucleus	54.29	40.64
CDY24951	Canola	nucleus	53.93	40.27
PGSC0003DMT400005512	Potato	mitochondrion	55.36	40.16
Solyc06g005650.2.1	Tomato	extracellular	28.57	40.0
GSMUA_Achr10P...	Banana	mitochondrion	57.14	39.8
CDX80258	Canola	plastid	50.36	39.72
CDY61251	Canola	cytosol	51.07	39.61
PGSC0003DMT400016233	Potato	nucleus	55.0	39.09
Solyc04g011610.1.1	Tomato	nucleus	55.0	38.99
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	51.07	38.34
Bra020313.1-P	Field mustard	plastid	52.5	37.79
Bra006709.1-P	Field mustard	plastid	52.14	37.15
CDY48679	Canola	cytosol, plastid	44.29	37.13
CDX88709	Canola	cytosol, plastid	52.14	37.06
Bra002559.1-P	Field mustard	plastid	52.5	37.03
CDX99105	Canola	cytosol, plastid	42.5	36.73
AT3G46620.1	Thale cress	cytosol, plastid	51.79	36.71
AT2G39720.2	Thale cress	nucleus	52.5	36.66
CDY33046	Canola	plastid	43.93	35.96
KRH15082	Soybean	nucleus	48.93	35.86
KRH73053	Soybean	nucleus	48.57	34.78
AT5G59550.2	Thale cress	nucleus, plastid	53.21	29.1
TraesCS3A01G440000.1	Wheat	mitochondrion	27.14	26.3
TraesCS6A01G330700.1	Wheat	mitochondrion	26.43	22.7
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	25.36	22.26
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	26.43	22.09
TraesCS4A01G129800.1	Wheat	cytosol	25.36	21.91
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	28.57	21.62
TraesCS7A01G247700.1	Wheat	cytosol, plastid	20.71	21.56
TraesCS6A01G288800.1	Wheat	cytosol, plastid	22.5	20.52
TraesCS5A01G467700.1	Wheat	nucleus	26.07	18.07
TraesCS3A01G189200.1	Wheat	cytosol	23.57	17.6
TraesCS7A01G391700.1	Wheat	cytosol	20.0	16.92
TraesCS3A01G330900.1	Wheat	mitochondrion	23.21	16.13
TraesCS5A01G145800.1	Wheat	nucleus	21.79	11.96

Protein Annotations

EnsemblPlants:TraesCS4A01G095800.1	EnsemblPlantsGene:TraesCS4A01G095800	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF1	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:103767149..103767991

Molecular Weight (calculated)

29654.2 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.254

Length

280 amino acids

Sequence
(BLAST)

001: MASSPVSYWC YHCSRFVRVS PATVVCPDCD GGFLEQFPHP PPPRGGGGSG RRGAMNPVIV LRGGSLSGFE LYYEDGSGDG LRPLPGDVSH LLMGSGFHRL
101: LDQFSRLEAA APRPPASKAA VESMPSVTVA GGGGAHCAVC QEAFEPGAAA REMPCKHVYH QDCILPWLSL RNSCPICRSE LPAAAVPEAE ADAGLTIWRL
201: PRGGFAVGRF AGGPREQLPV VYTELDGGFS NGVGPRRVTW PEGEGQVDGG EGRIRRVFRN LFGCFGRGGR PESSSQSRSG

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.