Factsheet for HORVU4Hr1G060130.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G209100.1	Wheat	plastid	78.98	99.29
TraesCS4D01G209500.1	Wheat	plastid	78.98	99.29
TraesCS4A01G095800.1	Wheat	cytosol	78.69	98.93
Os03t0271600-01	Rice	plastid	75.0	94.62
EER95109	Sorghum	plastid	72.16	92.36
Zm00001d047824_P001	Maize	plastid	72.44	91.73
Zm00001d028590_P001	Maize	plastid	72.44	91.73
GSMUA_Achr7P15040_001	Banana	mitochondrion	44.32	49.37
KRH23103	Soybean	nucleus	42.61	47.77
KRH10229	Soybean	nucleus	42.05	47.13
GSMUA_Achr10P...	Banana	mitochondrion	44.03	45.99
CDY20473	Canola	nucleus, plastid	42.61	44.91
HORVU7Hr1G055010.1	Barley	cytosol	28.12	44.8
Bra005020.1-P	Field mustard	nucleus, plastid	42.33	43.7
CDX74839	Canola	cytosol, plastid	39.77	43.21
GSMUA_Achr5P07070_001	Banana	nucleus	40.06	42.86
KRH29763	Soybean	nucleus	43.75	42.66
KRG97885	Soybean	mitochondrion	43.18	42.58
KRH24759	Soybean	nucleus	43.47	42.38
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	46.02	41.97
HORVU1Hr1G004330.14	Barley	cytosol	47.73	41.9
KRH30994	Soybean	nucleus	46.59	41.73
CDY53450	Canola	cytosol	37.78	41.3
GSMUA_Achr2P19140_001	Banana	mitochondrion	42.33	41.16
Bra000143.1-P	Field mustard	nucleus	43.18	40.53
CDY07641	Canola	nucleus	42.9	40.37
CDY24951	Canola	nucleus	42.9	40.27
PGSC0003DMT400005512	Potato	mitochondrion	44.03	40.16
Solyc06g005650.2.1	Tomato	extracellular	22.73	40.0
CDX80258	Canola	plastid	40.34	40.0
CDY61251	Canola	cytosol	40.91	39.89
GSMUA_Achr10P...	Banana	mitochondrion	45.17	39.55
HORVU3Hr1G041030.1	Barley	mitochondrion	43.47	39.53
Solyc04g011610.1.1	Tomato	nucleus	44.03	39.24
PGSC0003DMT400016233	Potato	nucleus	43.75	39.09
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.91	38.61
Bra020313.1-P	Field mustard	plastid	42.05	38.05
HORVU3Hr1G115000.7	Barley	mitochondrion	42.05	37.76
CDY48679	Canola	cytosol, plastid	35.51	37.43
Bra006709.1-P	Field mustard	plastid	41.48	37.15
CDX88709	Canola	cytosol, plastid	41.48	37.06
CDX99105	Canola	cytosol, plastid	34.09	37.04
Bra002559.1-P	Field mustard	plastid	41.76	37.03
AT3G46620.1	Thale cress	cytosol, plastid	41.48	36.96
AT2G39720.2	Thale cress	nucleus	41.48	36.41
CDY33046	Canola	plastid	34.94	35.96
KRH15082	Soybean	nucleus	38.64	35.6
KRH73053	Soybean	nucleus	38.35	34.53
AT5G59550.2	Thale cress	nucleus, plastid	43.75	30.08
HORVU3Hr1G096110.1	Barley	mitochondrion	20.74	25.26
HORVU0Hr1G019650.1	Barley	mitochondrion	20.74	23.03
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	21.02	22.22
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	23.01	22.07
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	21.31	21.01
HORVU6Hr1G072430.1	Barley	cytosol	20.74	20.05
HORVU4Hr1G051610.2	Barley	cytosol	19.03	19.42
HORVU5Hr1G111530.1	Barley	nucleus	20.45	18.09
HORVU3Hr1G039220.1	Barley	cytosol	18.47	17.24
HORVU1Hr1G068950.2	Barley	golgi	18.75	17.1
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	16.76	15.95
HORVU7Hr1G092570.1	Barley	cytosol	16.76	15.4

Protein Annotations

EnsemblPlants:HORVU4Hr1G060130.1	EnsemblPlantsGene:HORVU4Hr1G060130	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF1	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B46F4AA
UniProt:A0A287PA10	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:504126934..504128719

Molecular Weight (calculated)

37006.1 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.256

Length

352 amino acids

Sequence
(BLAST)

001: PRNSPLPSPS PGLLPRCLPE TPNSKIDLGI PASRAPQIRA IARPPVRSAP AAAVGADRPG DFSEGALARP LPMASSPVSY WCYHCSRFVR VSPATVVCPD
101: CDGGFLEQFP QPPPPRGGGG SGRRGAMNPV IVLRGGSLSG FELYYEDGSG DGLRPLPGDV SHLLMGSGFH RLLDQFSRLE AAAPRPPASK AAVESMPSVT
201: VAGGAGAHCA VCQEAFEPGA AAREMPCKHV YHQDCILPWL SLRNSCPICR SELPAAAVPE AEADAGLTIW RLPRGGFAVG RFAGGPREQL PVVYTELDGG
301: FSNGVGPRRV TWPEGEGQVD GGEGRIRRVF RNLFGCFGRG GRPESSSQAR SG

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.