Factsheet for Solyc06g005650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005512	Potato	mitochondrion	97.0	50.26
HORVU7Hr1G055010.1	Barley	cytosol	47.0	42.53
KRH10229	Soybean	nucleus	55.0	35.03
GSMUA_Achr7P15040_001	Banana	mitochondrion	54.0	34.18
KRH23103	Soybean	nucleus	53.5	34.08
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	65.0	33.68
GSMUA_Achr5P07070_001	Banana	nucleus	53.5	32.52
KRH29763	Soybean	nucleus	56.0	31.02
GSMUA_Achr10P...	Banana	mitochondrion	51.5	30.56
KRH24759	Soybean	nucleus	54.5	30.19
GSMUA_Achr10P...	Banana	nucleus	42.0	29.79
Os03t0271600-01	Rice	plastid	41.0	29.39
Solyc04g011610.1.1	Tomato	nucleus	57.0	28.86
EER95109	Sorghum	plastid	39.5	28.73
TraesCS4A01G095800.1	Wheat	cytosol	40.0	28.57
TraesCS4B01G209100.1	Wheat	plastid	40.0	28.57
TraesCS4D01G209500.1	Wheat	plastid	40.0	28.57
GSMUA_Achr2P19140_001	Banana	mitochondrion	51.5	28.45
Zm00001d047824_P001	Maize	plastid	39.5	28.42
Zm00001d028590_P001	Maize	plastid	39.5	28.42
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.5	28.2
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	47.0	26.78
TraesCS3D01G532300.1	Wheat	cytosol	51.5	26.68
CDY53450	Canola	cytosol	42.0	26.09
Zm00001d035677_P001	Maize	plastid	45.0	25.86
TraesCS3B01G595200.1	Wheat	cytosol	51.5	25.81
TraesCS1A01G029800.1	Wheat	cytosol	51.0	25.56
CDX80258	Canola	plastid	45.0	25.35
TraesCS1B01G036900.1	Wheat	cytosol	50.5	25.31
CDY61251	Canola	cytosol	45.5	25.21
HORVU1Hr1G004330.14	Barley	cytosol	50.5	25.19
TraesCS1D01G030300.1	Wheat	nucleus	50.5	25.12
Zm00001d011076_P001	Maize	plastid	48.5	25.06
Os05t0110000-01	Rice	mitochondrion	41.5	24.92
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.5	24.4
Bra006709.1-P	Field mustard	plastid	47.0	23.92
Bra020313.1-P	Field mustard	plastid	46.5	23.91
GSMUA_Achr10P...	Banana	mitochondrion	48.0	23.88
CDX88709	Canola	cytosol, plastid	47.0	23.86
EES17560	Sorghum	plastid	49.0	23.73
Bra002559.1-P	Field mustard	plastid	47.0	23.68
AT3G46620.1	Thale cress	cytosol, plastid	46.5	23.54
HORVU4Hr1G060130.1	Barley	cytosol	40.0	22.73
HORVU3Hr1G041030.1	Barley	mitochondrion	40.0	20.67
CDX99105	Canola	cytosol, plastid	32.5	20.06
CDY48679	Canola	cytosol, plastid	33.5	20.06
Os01t0972000-01	Rice	nucleus	33.5	20.06
CDY33046	Canola	plastid	33.5	19.59
AT5G59550.2	Thale cress	nucleus, plastid	48.0	18.75
HORVU3Hr1G115000.7	Barley	mitochondrion	35.5	18.11
Solyc04g009170.1.1	Tomato	nucleus	26.0	16.83
Solyc01g009000.2.1	Tomato	plastid	24.5	15.41
Solyc03g098590.2.1	Tomato	cytosol	26.5	14.36
Solyc11g012950.1.1	Tomato	cytosol	23.5	14.11
Solyc09g074460.1.1	Tomato	nucleus	26.0	13.79
Solyc08g075910.1.1	Tomato	nucleus	19.5	12.96
Solyc01g104260.2.1	Tomato	mitochondrion	18.5	12.33
Solyc01g050040.2.1	Tomato	nucleus	15.0	10.27
Solyc02g089410.2.1	Tomato	nucleus	12.0	7.34
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	14.5	7.3
Solyc03g114680.2.1	Tomato	nucleus	15.5	6.22

Protein Annotations

EnsemblPlants:Solyc06g005650.2.1	EnsemblPlantsGene:Solyc06g005650.2	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF14369	SEG:seg
UniParc:UPI0002765D23	UniProt:K4C347	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:715033..716146

Molecular Weight (calculated)

22322.0 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.611

Length

200 amino acids

Sequence
(BLAST)

001: MSSYWCYRCT RFVRISVGND VVCPHCDSGF IEVAEGNIGS PESRRRFPMW NERPESDRSV NMGSRRSRRN RGDRSPFNPV IVLRSPSEAP GEDEAAAAAE
101: ERSYELYYDD GEGSGLRPLP PTMSEFLMGS GFDRLLDQLA QIEVNGFGRP ENPPASKSAI ESMPIIQIAS NHVNSETHCA VCKEAFDLGS EAREINGRWI

Best Arabidopsis Sequence Match ( AT5G59550.1 )
(BLAST)

001: MPSTPTTPTT TTPITASYWC YSCTRFVSVW ADQGTTTVGS VACPHCDGGF IEQINDSSSA ATELTIPAST EVRSINNNRR SVIRRRRSGR RPSFNPVIVL
101: QGGAGEREEG EEGDAARDRR AFEFYYDDGS GSGLRPLPDS VSEILMGSGF ERLLEQLSQI EASATGIGRS GNPPASKSAI ESLPRVEISD CHIGSEANCA
201: VCTEIFETET EAREMPCKHL FHDDCIVPWL SIRNSCPVCR FELPSEPNRR SNNNEEDNAV GMTIWRLPGG GFAVGRFNAA MRDGERVLPV VLTEMDGGGI
301: GNSQDGPRRI SWVRSHGTLE SDSNGTGSGS GSGGRLRRMV RGMVSLMRRV RPNRSSSSSS AAISTSSDNL DLNIEVESRV LDRSNSVMRR YFRRNRSNRD
401: SSSSVLH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.