Factsheet for Solyc03g114680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc06g053930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G08139.1	Solyc06g053930.2.1	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063293	Potato	nucleus	80.52	92.82
KRH56750	Soybean	cytosol	29.92	43.57
VIT_17s0000g04730.t01	Wine grape	nucleus	38.15	43.28
Os06t0633500-01	Rice	cytosol, nucleus	10.44	41.94
KRH03189	Soybean	nucleus	29.72	41.69
CDY02194	Canola	peroxisome	28.11	35.18
CDX69973	Canola	cytosol	25.1	34.72
AT5G60820.1	Thale cress	cytosol	29.12	34.61
CDY51628	Canola	peroxisome	28.11	34.48
Bra013006.1-P	Field mustard	nucleus	28.71	34.29
Bra005970.1-P	Field mustard	cytosol	19.48	33.45
CDX78323	Canola	cytosol	18.88	32.64
Bra009323.1-P	Field mustard	cytosol	24.7	32.45
CDY21513	Canola	cytosol	23.09	32.3
CDY69134	Canola	cytosol	18.88	32.3
AT5G08139.1	Thale cress	cytosol	24.1	31.91
Solyc02g089410.2.1	Tomato	nucleus	19.48	29.66
GSMUA_Achr8P24510_001	Banana	cytosol	23.49	29.55
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	23.09	28.97
OQU85475	Sorghum	cytosol	16.67	25.94
TraesCS6A01G288800.1	Wheat	cytosol, plastid	15.86	25.73
TraesCS6B01G318600.1	Wheat	cytosol, plastid	15.66	25.41
Zm00001d051736_P001	Maize	cytosol	16.67	25.15
Os02t0727700-01	Rice	cytosol, nucleus, plastid	15.46	24.76
GSMUA_Achr3P06300_001	Banana	cytosol	25.7	24.52
TraesCS7A01G247700.1	Wheat	cytosol, plastid	12.05	22.3
Zm00001d046663_P001	Maize	cytosol	13.05	21.81
HORVU6Hr1G072430.1	Barley	cytosol	15.86	21.7
TraesCS7D01G246300.1	Wheat	plastid	11.65	21.56
TraesCS7B01G144100.1	Wheat	plastid	11.65	21.56
Os08t0487500-01	Rice	plastid	11.65	21.4
EER90075	Sorghum	nucleus	12.85	21.12
Solyc04g009170.1.1	Tomato	nucleus	13.05	21.04
Solyc09g074460.1.1	Tomato	nucleus	15.86	20.95
EES14331	Sorghum	plastid	11.85	20.14
Zm00001d031273_P001	Maize	cytosol, plastid	11.45	19.72
TraesCS7A01G391700.1	Wheat	cytosol	12.65	19.03
TraesCS7D01G387300.1	Wheat	cytosol	12.45	19.02
TraesCS7B01G293600.1	Wheat	cytosol	12.45	18.79
TraesCS6D01G160300.1	Wheat	nucleus	13.05	18.68
Zm00001d053704_P001	Maize	cytosol	13.25	18.54
Solyc03g098590.2.1	Tomato	cytosol	13.25	17.89
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	13.86	17.83
Solyc08g075910.1.1	Tomato	nucleus	10.64	17.61
Solyc01g104260.2.1	Tomato	mitochondrion	10.44	17.33
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	12.85	17.3
Solyc01g009000.2.1	Tomato	plastid	11.04	17.3
HORVU7Hr1G092570.1	Barley	cytosol	13.05	16.97
TraesCS6B01G198800.1	Wheat	nucleus	13.65	16.96
Os02t0191500-01	Rice	nucleus	12.25	16.27
Solyc04g011610.1.1	Tomato	nucleus	12.65	15.95
Solyc06g005650.2.1	Tomato	extracellular	6.22	15.5
Solyc11g012950.1.1	Tomato	cytosol	9.44	14.11
Solyc01g050040.2.1	Tomato	nucleus	8.03	13.7

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BKX0
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	SMART:SM00184	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc03g114680.2	EnsemblPlants:Solyc03g114680.2.1	UniParc:UPI00027683B4	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr3:-:64583707..64587510

Molecular Weight (calculated)

56341.7 Da

IEP (calculated)

3.931

GRAVY (calculated)

-0.478

Length

498 amino acids

Sequence
(BLAST)

001: MAQVSISLLN FLNDGEDDVI EHENGVVEDL DSSPYWPLSF GDFDVYDPSD LSDFPSRSQI SSYSRGRTGL ALSDDVSETD SVVTVMDREN QVNFVMDMFQ
101: QRVEQSQSLI RVVSNPDLLH ADPVLETDFG LIGGNEFTGM SSLDVDFGLG LGFRGDSDNS GFHIEDCDGP EQFVSGLRVV DYESDWDPDD NCVSGRLFNL
201: EEVDGEDENE NICDNESDDP SLRLCWGSFQ LEDHRDVNED FEWEEIDGRV DEREILSMFL DVEEVSESPA PEDRARELEN LEWEFLLNVQ NLEPDPEITN
301: DEFDFGRHVD RDDYNYTTEY ELLFGQFAEG DHGFLGRPPA SMTVVRDLPT VAVSKGDLEN NNATCAICKD ELNLGEKVRQ LPCAHRYHGD CILPWLGIRN
401: TCPVCRYELP TDDHGYERRR RVQTIHTLEL DQVLFIVIVS VASQLGRAKS EFLLALECLQ IDHHHHPNAR EVGEKLYGIC LDKFCSGANG TSYPISLL

Best Arabidopsis Sequence Match ( AT5G08139.1 )
(BLAST)

001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.