Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 74.45 | 88.27 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 72.8 | 86.32 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 54.4 | 63.67 |
| OQU85475 | Sorghum | cytosol | 54.95 | 62.5 |
| Zm00001d051736_P001 | Maize | cytosol | 54.12 | 59.7 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 14.84 | 24.43 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 22.8 | 20.96 |
| Solyc02g089410.2.1 | Tomato | nucleus | 18.68 | 20.8 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 20.05 | 20.74 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 20.33 | 20.73 |
| HORVU1Hr1G043220.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 20.88 | 20.71 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 20.88 | 20.54 |
| CDY69134 | Canola | cytosol | 16.21 | 20.27 |
| KRH56750 | Soybean | cytosol | 18.68 | 19.88 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 15.66 | 19.72 |
| KRG93748 | Soybean | nucleus, plastid | 20.33 | 19.47 |
| CDX78323 | Canola | cytosol | 15.38 | 19.44 |
| Bra005970.1-P | Field mustard | cytosol | 15.38 | 19.31 |
| KRH18313 | Soybean | nucleus | 19.78 | 19.25 |
| PGSC0003DMT400003515 | Potato | nucleus | 19.51 | 19.14 |
| KRH03189 | Soybean | nucleus | 18.41 | 18.87 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 19.78 | 18.8 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 20.6 | 18.7 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 20.33 | 18.64 |
| PGSC0003DMT400063293 | Potato | nucleus | 21.98 | 18.52 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 21.98 | 18.22 |
| PGSC0003DMT400068309 | Potato | cytosol | 19.78 | 18.09 |
| CDX69496 | Canola | cytosol | 14.29 | 18.06 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 18.96 | 17.6 |
| CDX69973 | Canola | cytosol | 17.31 | 17.5 |
| Bra008671.1-P | Field mustard | nucleus | 13.74 | 17.42 |
| HORVU1Hr1G068950.2 | Barley | golgi | 18.41 | 17.36 |
| AT5G08139.1 | Thale cress | cytosol | 17.86 | 17.29 |
| CDY34722 | Canola | cytosol | 18.41 | 17.18 |
| CDY34721 | Canola | cytosol | 18.41 | 17.18 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 18.41 | 17.14 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 14.84 | 17.03 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 17.58 | 16.98 |
| Bra021467.1-P | Field mustard | nucleus | 18.13 | 16.92 |
| CDY21513 | Canola | cytosol | 16.48 | 16.85 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 17.86 | 16.8 |
| Bra009323.1-P | Field mustard | cytosol | 17.31 | 16.62 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 15.38 | 16.23 |
| AT3G02340.2 | Thale cress | cytosol | 17.86 | 15.89 |
| Solyc03g114680.2.1 | Tomato | nucleus | 21.7 | 15.86 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 22.53 | 15.71 |
| AT5G15820.1 | Thale cress | cytosol | 14.84 | 15.52 |
| CDY26465 | Canola | cytosol | 14.29 | 15.34 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 14.01 | 15.32 |
| CDX85531 | Canola | cytosol | 14.29 | 15.16 |
| CDX90972 | Canola | cytosol | 13.74 | 14.93 |
| CDY02194 | Canola | peroxisome | 15.93 | 14.57 |
| CDY51628 | Canola | peroxisome | 16.21 | 14.53 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 15.66 | 14.32 |
| AT5G60820.1 | Thale cress | cytosol | 15.93 | 13.84 |
| Bra013006.1-P | Field mustard | nucleus | 15.66 | 13.67 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 14.84 | 13.6 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G072430.1 | EnsemblPlantsGene:HORVU6Hr1G072430 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000B483D62 | UniProt:A0A287UMR9 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:503361780..503363282
Molecular Weight (calculated)
38884.6 Da
IEP (calculated)
4.263
GRAVY (calculated)
-0.497
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: EKTKQNKTKA TGAAQRSEWT KGKERESERA TPAAQTSPPH PAFGVLPPMA NNSLSHHLLL PLAAAGGDDD DPASSSSSSS SSAVTFPSFW PPFPSLLSDS
101: DSDAPFPPRR IDRCVAARQD TAAAFLGLDF HDEDYGADWD APDEAGLPLC WDCLQLEEHD AHQRWDLALS DSDEWEQVAV RGHEEAAEPP APRSIEWEVL
201: LAANSLGGLM IDEDVDGTGG GGIETYFLDG GADDDDDGML FGQLAAEAEH EPPAKGGRAA AKAAVEGLPT VVVAEADAVR GGAQCAVCKD GIEAGEGARR
301: LPCAHLYHDA CILPWLAIRN TCPLCRHELP TDDPDYEKWK ARRAAGDRHG IAARQAEVIL LNDD
101: DSDAPFPPRR IDRCVAARQD TAAAFLGLDF HDEDYGADWD APDEAGLPLC WDCLQLEEHD AHQRWDLALS DSDEWEQVAV RGHEEAAEPP APRSIEWEVL
201: LAANSLGGLM IDEDVDGTGG GGIETYFLDG GADDDDDGML FGQLAAEAEH EPPAKGGRAA AKAAVEGLPT VVVAEADAVR GGAQCAVCKD GIEAGEGARR
301: LPCAHLYHDA CILPWLAIRN TCPLCRHELP TDDPDYEKWK ARRAAGDRHG IAARQAEVIL LNDD
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.