Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85531 | Canola | cytosol | 46.26 | 46.94 |
| CDX90972 | Canola | cytosol | 44.25 | 45.97 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 48.85 | 42.82 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 13.22 | 37.1 |
| AT3G02340.2 | Thale cress | cytosol | 42.53 | 36.19 |
| Bra008671.1-P | Field mustard | nucleus | 27.3 | 33.1 |
| CDX69496 | Canola | cytosol | 27.3 | 32.99 |
| CDY26465 | Canola | cytosol | 31.03 | 31.86 |
| KRH18313 | Soybean | nucleus | 26.15 | 24.33 |
| KRG93748 | Soybean | nucleus, plastid | 25.29 | 23.16 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 25.57 | 22.76 |
| Solyc02g089410.2.1 | Tomato | nucleus | 21.26 | 22.63 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 25.0 | 21.91 |
| PGSC0003DMT400068309 | Potato | cytosol | 25.0 | 21.86 |
| PGSC0003DMT400003515 | Potato | nucleus | 23.28 | 21.83 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 23.28 | 20.45 |
| Os08t0487500-01 | Rice | plastid | 15.23 | 19.56 |
| TraesCS7D01G246300.1 | Wheat | plastid | 14.94 | 19.33 |
| TraesCS7B01G144100.1 | Wheat | plastid | 14.94 | 19.33 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 14.66 | 18.96 |
| AT5G08139.1 | Thale cress | cytosol | 20.4 | 18.88 |
| AT5G64920.1 | Thale cress | cytosol | 18.1 | 18.86 |
| Zm00001d046663_P001 | Maize | cytosol | 16.09 | 18.79 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 16.67 | 18.65 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.38 | 18.57 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 15.8 | 17.92 |
| EER90075 | Sorghum | nucleus | 15.52 | 17.82 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.67 | 17.79 |
| OQU85475 | Sorghum | cytosol | 16.09 | 17.5 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 14.37 | 17.3 |
| Zm00001d051736_P001 | Maize | cytosol | 16.38 | 17.27 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.38 | 17.22 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 16.09 | 16.97 |
| EES14331 | Sorghum | plastid | 14.08 | 16.72 |
| Zm00001d053704_P001 | Maize | cytosol | 16.67 | 16.29 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 24.43 | 16.28 |
| AT5G60820.1 | Thale cress | cytosol | 19.54 | 16.23 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 17.24 | 15.67 |
| AT3G56580.1 | Thale cress | mitochondrion | 14.37 | 15.62 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 14.94 | 14.94 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 15.52 | 14.84 |
| AT3G19950.2 | Thale cress | cytosol | 16.38 | 14.77 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 15.23 | 14.32 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 15.8 | 14.21 |
| AT1G60360.1 | Thale cress | nucleus | 12.64 | 13.46 |
| AT2G40830.4 | Thale cress | mitochondrion | 12.64 | 13.41 |
| AT3G13430.2 | Thale cress | nucleus | 12.07 | 13.33 |
| Os02t0191500-01 | Rice | nucleus | 14.37 | 13.33 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 15.23 | 13.22 |
| AT4G26400.1 | Thale cress | nucleus | 13.51 | 13.2 |
| AT5G56340.1 | Thale cress | nucleus | 14.08 | 12.37 |
| AT2G39720.2 | Thale cress | nucleus | 14.08 | 12.22 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 13.51 | 11.9 |
| AT5G01980.1 | Thale cress | nucleus | 16.67 | 11.76 |
| AT1G55530.2 | Thale cress | nucleus | 11.49 | 11.4 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 12.64 | 8.59 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:831439 | UniProt:A0A178ULW9 | ProteinID:AED92211.1 | ArrayExpress:AT5G15820 |
| EnsemblPlantsGene:AT5G15820 | RefSeq:AT5G15820 | TAIR:AT5G15820 | RefSeq:AT5G15820-TAIR-G | EnsemblPlants:AT5G15820.1 | TAIR:AT5G15820.1 |
| EMBL:AY057666 | EMBL:AY113016 | ProteinID:CAC01781.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_197086.1 | ProteinID:OAO94848.1 | PFAM:PF13639 | PO:PO:0000293 | PFscan:PS50089 | PANTHER:PTHR44679 |
| PANTHER:PTHR44679:SF3 | UniProt:Q9LFU4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A81F2 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
Coordinates
chr5:+:5161724..5163195
Molecular Weight (calculated)
38561.5 Da
IEP (calculated)
3.814
GRAVY (calculated)
-0.368
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.