Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46577 | Canola | nucleus | 62.63 | 85.22 |
| CDY32791 | Canola | nucleus | 71.72 | 80.68 |
| Bra002823.1-P | Field mustard | nucleus | 71.46 | 80.4 |
| AT4G26400.1 | Thale cress | nucleus | 60.35 | 67.13 |
| KRG97316 | Soybean | nucleus | 52.78 | 60.76 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 53.28 | 57.34 |
| Bra028935.1-P | Field mustard | nucleus | 78.03 | 54.4 |
| PGSC0003DMT400046527 | Potato | nucleus | 48.23 | 53.06 |
| AT1G55530.2 | Thale cress | nucleus | 46.21 | 52.14 |
| AT3G13430.2 | Thale cress | nucleus | 40.91 | 51.43 |
| GSMUA_Achr11P... | Banana | nucleus | 34.85 | 51.11 |
| CDY11934 | Canola | nucleus | 79.29 | 48.16 |
| Os03t0812200-01 | Rice | nucleus | 40.66 | 43.63 |
| Zm00001d010635_P001 | Maize | nucleus | 33.84 | 42.95 |
| Os05t0488800-01 | Rice | nucleus | 34.34 | 42.11 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 34.34 | 40.96 |
| Zm00001d038528_P001 | Maize | cytosol | 34.34 | 40.84 |
| Zm00001d013005_P002 | Maize | nucleus | 38.13 | 40.7 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 34.09 | 40.66 |
| KXG37275 | Sorghum | nucleus | 38.64 | 39.95 |
| Solyc01g050040.2.1 | Tomato | nucleus | 29.29 | 39.73 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 38.89 | 38.31 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 38.89 | 38.12 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 38.13 | 37.94 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 38.38 | 37.62 |
| KXG22238 | Sorghum | plastid | 35.86 | 36.5 |
| HORVU1Hr1G068950.2 | Barley | golgi | 34.6 | 35.49 |
| AT2G40830.4 | Thale cress | mitochondrion | 23.48 | 28.35 |
| AT3G56580.1 | Thale cress | mitochondrion | 22.22 | 27.5 |
| AT5G64920.1 | Thale cress | cytosol | 19.95 | 23.65 |
| AT3G19950.2 | Thale cress | cytosol | 22.98 | 23.58 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 22.47 | 22.53 |
| AT1G60360.1 | Thale cress | nucleus | 17.93 | 21.71 |
| AT2G39720.2 | Thale cress | nucleus | 19.7 | 19.45 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 22.73 | 17.58 |
| AT5G08139.1 | Thale cress | cytosol | 15.15 | 15.96 |
| AT5G01980.1 | Thale cress | nucleus | 19.7 | 15.82 |
| AT5G15820.1 | Thale cress | cytosol | 12.37 | 14.08 |
| AT5G60820.1 | Thale cress | cytosol | 14.65 | 13.84 |
| AT3G02340.2 | Thale cress | cytosol | 13.38 | 12.96 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:835734 | ProteinID:AED96751.1 | ArrayExpress:AT5G56340 | EnsemblPlantsGene:AT5G56340 |
| RefSeq:AT5G56340 | TAIR:AT5G56340 | RefSeq:AT5G56340-TAIR-G | EnsemblPlants:AT5G56340.1 | TAIR:AT5G56340.1 | Symbol:ATCRT1 |
| EMBL:AY063905 | EMBL:AY091194 | Unigene:At.8859 | ProteinID:BAB11261.1 | GO:GO:0000209 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_200445.1 | PFAM:PF13639 | PFAM:PF14369 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | UniProt:Q9FM98 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000009D1D8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
Coordinates
chr5:+:22817480..22819730
Molecular Weight (calculated)
44362.1 Da
IEP (calculated)
5.232
GRAVY (calculated)
-0.863
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.