Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028935.1-P | Field mustard | nucleus | 76.38 | 87.68 |
| CDY46577 | Canola | nucleus | 37.73 | 84.54 |
| CDY32791 | Canola | nucleus | 43.87 | 81.25 |
| AT5G56340.1 | Thale cress | nucleus | 48.16 | 79.29 |
| CDX92768 | Canola | nucleus | 31.75 | 66.99 |
| CDX92770 | Canola | nucleus | 32.98 | 66.36 |
| CDY42740 | Canola | nucleus | 32.36 | 65.53 |
| CDX89343 | Canola | cytosol, mitochondrion | 32.21 | 59.66 |
| CDX94342 | Canola | mitochondrion, nucleus | 34.2 | 57.62 |
| KRG97316 | Soybean | nucleus | 29.91 | 56.69 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 29.91 | 52.99 |
| CDY43991 | Canola | nucleus | 24.23 | 51.13 |
| PGSC0003DMT400046527 | Potato | nucleus | 27.91 | 50.56 |
| GSMUA_Achr11P... | Banana | nucleus | 20.55 | 49.63 |
| CDY26096 | Canola | nucleus | 21.78 | 48.3 |
| CDY08249 | Canola | cytosol | 24.54 | 47.76 |
| CDY10554 | Canola | cytosol | 21.93 | 46.89 |
| CDY56022 | Canola | nucleus | 22.39 | 46.65 |
| CDY56080 | Canola | cytosol | 19.63 | 45.07 |
| CDY50031 | Canola | cytosol | 18.71 | 42.07 |
| Os03t0812200-01 | Rice | nucleus | 23.77 | 42.01 |
| Zm00001d010635_P001 | Maize | nucleus | 19.63 | 41.03 |
| Os05t0488800-01 | Rice | nucleus | 19.79 | 39.94 |
| CDY28208 | Canola | cytosol | 14.11 | 39.66 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 19.94 | 39.16 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 19.79 | 38.86 |
| CDY36069 | Canola | cytosol | 12.88 | 38.71 |
| CDY56081 | Canola | nucleus | 14.11 | 38.49 |
| Solyc01g050040.2.1 | Tomato | nucleus | 17.18 | 38.36 |
| Zm00001d013005_P002 | Maize | nucleus | 21.63 | 38.01 |
| Zm00001d038528_P001 | Maize | cytosol | 19.17 | 37.54 |
| KXG37275 | Sorghum | nucleus | 21.93 | 37.34 |
| CDX82271 | Canola | cytosol | 12.12 | 37.09 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 22.7 | 36.82 |
| HORVU1Hr1G068950.2 | Barley | golgi | 21.78 | 36.79 |
| KXG22238 | Sorghum | plastid | 21.93 | 36.76 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 22.7 | 36.63 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 22.09 | 36.18 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 22.39 | 36.14 |
| CDY72364 | Canola | cytosol | 11.96 | 35.14 |
| CDY23599 | Canola | golgi, mitochondrion | 32.52 | 34.81 |
| CDX75998 | Canola | nucleus | 8.9 | 30.21 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 14.57 | 29.41 |
| CDY24592 | Canola | nucleus | 14.26 | 28.97 |
| CDY22790 | Canola | nucleus | 11.81 | 28.52 |
| CDY23878 | Canola | mitochondrion, nucleus | 13.19 | 28.2 |
| CDY68603 | Canola | cytosol | 10.43 | 28.1 |
| CDY33437 | Canola | cytosol | 13.96 | 28.09 |
| CDY22483 | Canola | mitochondrion | 13.04 | 28.05 |
| CDY32333 | Canola | cytosol | 9.97 | 27.66 |
| CDX79968 | Canola | mitochondrion, nucleus | 12.27 | 26.94 |
| CDY35437 | Canola | mitochondrion, nucleus | 13.04 | 26.81 |
| CDX94665 | Canola | nucleus | 9.66 | 26.81 |
| CDY27204 | Canola | mitochondrion, nucleus | 12.73 | 26.6 |
| CDX72127 | Canola | mitochondrion | 12.73 | 26.27 |
| CDY53450 | Canola | cytosol | 12.12 | 24.53 |
| CDY61251 | Canola | cytosol | 13.5 | 24.38 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 10.74 | 24.14 |
| CDX74533 | Canola | cytosol | 10.74 | 23.97 |
| CDY42507 | Canola | cytosol | 12.27 | 23.6 |
| CDX80258 | Canola | plastid | 12.73 | 23.38 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 10.58 | 23.08 |
| CDX94901 | Canola | cytosol | 10.89 | 22.61 |
| CDX99105 | Canola | cytosol, plastid | 11.2 | 22.53 |
| CDX88709 | Canola | cytosol, plastid | 13.19 | 21.83 |
| CDY20473 | Canola | nucleus, plastid | 11.04 | 21.56 |
| CDY01669 | Canola | plastid | 10.58 | 21.36 |
| CDY33046 | Canola | plastid | 11.04 | 21.05 |
| CDX74839 | Canola | cytosol, plastid | 10.43 | 20.99 |
| CDY07641 | Canola | nucleus | 11.81 | 20.59 |
| CDY24951 | Canola | nucleus | 11.81 | 20.53 |
| CDY48679 | Canola | cytosol, plastid | 10.43 | 20.36 |
| CDX78323 | Canola | cytosol | 7.67 | 17.36 |
| CDY69134 | Canola | cytosol | 7.67 | 17.18 |
| CDY58938 | Canola | nucleus | 11.04 | 16.33 |
| CDY03622 | Canola | nucleus | 11.04 | 16.14 |
| CDX69973 | Canola | cytosol | 8.59 | 15.56 |
| CDY21513 | Canola | cytosol | 8.44 | 15.45 |
| CDY01221 | Canola | cytosol | 4.91 | 14.68 |
| CDY34721 | Canola | cytosol | 8.74 | 14.62 |
| CDY34722 | Canola | cytosol | 8.74 | 14.62 |
| CDX90972 | Canola | cytosol | 7.36 | 14.33 |
| CDX69496 | Canola | cytosol | 6.13 | 13.89 |
| CDX85531 | Canola | cytosol | 7.21 | 13.7 |
| CDY26465 | Canola | cytosol | 6.75 | 12.98 |
| CDY02194 | Canola | peroxisome | 7.82 | 12.81 |
| CDY51628 | Canola | peroxisome | 7.82 | 12.56 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.80.10.10 | MapMan:35.1 | GO:A0A078FG41 | UniProt:A0A078FG41 | EnsemblPlants:CDY11934 |
| ProteinID:CDY11934 | ProteinID:CDY11934.1 | InterPro:FBD | EnsemblPlantsGene:GSBRNA2T00060780001 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF08387 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | SMART:SM00184 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE23F3 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC03g13600DBnaC03g13600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG41]
Coordinates
chrLK032015:-:512119..517303
Molecular Weight (calculated)
73781.2 Da
IEP (calculated)
6.065
GRAVY (calculated)
-0.520
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYPSGEFVK KLLSNCHVLE NLVVEQCEAD NATIFTVIVP SLKSLVLKTL ENKLGNDAHG FVIDAPSLEN FDIFHFSGFC TFESNMSKIV EAKLVLNTWK
101: LWKKLGSIAS FKRLHLCLPS LNNMYPAGSV FSSLVHLKIC TCETEWVNVL MCVLKDSPSL RALKLHQCHF LRSEEPRPCW NPAWNEPSSV PECLLSSIET
201: FEWVKYEGAE EEKEVVAFVF RSAKCLKKAT INFHSKTNDT DKKLEVIKEL VITKVEQDLN FLGSSEKKQK TFKRRRETME ETMAARYWCH MCSQMVNPTM
301: ESEIKCPFCQ SGFIEEMSGN GNGGGGLRDV QDPETEFGTT DRAMTLWAPI LLGMMSSPRR RRRFRRAEFG EEEEDNEDES NNVDHHHRAR RHGGEIDLDR
401: EFESLLRRRR RSSGNILQLL QGIRAGIASE YESSDNNERV IMINPYNQSL VVRDQTQTHS ALTSLGDYFI GPGLDLLLQH LAENDPNRQG TPPARKEAVE
501: ALPTVKVTEP LLQCSVCLDE FERGVEAKEM PCKHKFHVKC IVPWLEIHSS CPVCRFELPA GNDDDDDESK VVSERGGART RAVPESSDRE EVVENVERGR
601: EDDVRSGNGR RFSIPWPFSG FFSSSSSSSS SSSGPSQSGE NNVYSRSYGS SR
101: LWKKLGSIAS FKRLHLCLPS LNNMYPAGSV FSSLVHLKIC TCETEWVNVL MCVLKDSPSL RALKLHQCHF LRSEEPRPCW NPAWNEPSSV PECLLSSIET
201: FEWVKYEGAE EEKEVVAFVF RSAKCLKKAT INFHSKTNDT DKKLEVIKEL VITKVEQDLN FLGSSEKKQK TFKRRRETME ETMAARYWCH MCSQMVNPTM
301: ESEIKCPFCQ SGFIEEMSGN GNGGGGLRDV QDPETEFGTT DRAMTLWAPI LLGMMSSPRR RRRFRRAEFG EEEEDNEDES NNVDHHHRAR RHGGEIDLDR
401: EFESLLRRRR RSSGNILQLL QGIRAGIASE YESSDNNERV IMINPYNQSL VVRDQTQTHS ALTSLGDYFI GPGLDLLLQH LAENDPNRQG TPPARKEAVE
501: ALPTVKVTEP LLQCSVCLDE FERGVEAKEM PCKHKFHVKC IVPWLEIHSS CPVCRFELPA GNDDDDDESK VVSERGGART RAVPESSDRE EVVENVERGR
601: EDDVRSGNGR RFSIPWPFSG FFSSSSSSSS SSSGPSQSGE NNVYSRSYGS SR
001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
Arabidopsis Description
ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.