Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035835.1-P | Field mustard | nucleus | 98.45 | 97.25 |
| CDY24592 | Canola | nucleus | 94.12 | 94.7 |
| CDY72364 | Canola | cytosol | 56.04 | 81.53 |
| CDY36069 | Canola | cytosol | 53.56 | 79.72 |
| CDX82271 | Canola | cytosol | 52.32 | 79.34 |
| CDY33437 | Canola | cytosol | 78.95 | 78.7 |
| AT3G19950.2 | Thale cress | cytosol | 73.06 | 61.14 |
| CDY22790 | Canola | nucleus | 41.8 | 50.0 |
| KRH36132 | Soybean | nucleus | 39.94 | 45.1 |
| PGSC0003DMT400082489 | Potato | nucleus | 43.65 | 43.79 |
| Solyc04g009170.1.1 | Tomato | nucleus | 41.8 | 43.69 |
| KRG90622 | Soybean | nucleus | 40.25 | 43.62 |
| Zm00001d045625_P001 | Maize | cytosol | 41.8 | 43.55 |
| CDY42507 | Canola | cytosol | 45.51 | 43.36 |
| EER89027 | Sorghum | nucleus | 42.11 | 42.37 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 46.13 | 40.38 |
| Os06t0101300-01 | Rice | nucleus | 41.8 | 39.94 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 39.63 | 38.79 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 39.63 | 38.21 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 38.7 | 35.01 |
| CDY26096 | Canola | nucleus | 27.86 | 30.61 |
| CDY22483 | Canola | mitochondrion | 27.86 | 29.7 |
| CDY46577 | Canola | nucleus | 26.32 | 29.21 |
| CDY23878 | Canola | mitochondrion, nucleus | 27.24 | 28.85 |
| CDY10554 | Canola | cytosol | 26.93 | 28.52 |
| CDX92768 | Canola | nucleus | 26.93 | 28.16 |
| CDX75998 | Canola | nucleus | 16.72 | 28.12 |
| CDY35437 | Canola | mitochondrion, nucleus | 27.55 | 28.08 |
| CDY08249 | Canola | cytosol | 28.48 | 27.46 |
| CDY43991 | Canola | nucleus | 26.01 | 27.18 |
| CDX92770 | Canola | nucleus | 26.93 | 26.85 |
| CDY56022 | Canola | nucleus | 26.01 | 26.84 |
| CDY32333 | Canola | cytosol | 19.5 | 26.81 |
| CDX79968 | Canola | mitochondrion, nucleus | 24.46 | 26.6 |
| CDX72127 | Canola | mitochondrion | 26.01 | 26.58 |
| CDY50031 | Canola | cytosol | 23.84 | 26.55 |
| CDY56080 | Canola | cytosol | 23.22 | 26.41 |
| CDY27204 | Canola | mitochondrion, nucleus | 25.39 | 26.28 |
| CDY42740 | Canola | nucleus | 25.7 | 25.78 |
| CDY32791 | Canola | nucleus | 27.86 | 25.57 |
| CDY56081 | Canola | nucleus | 18.58 | 25.1 |
| CDX89343 | Canola | cytosol, mitochondrion | 26.93 | 24.72 |
| CDX74839 | Canola | cytosol, plastid | 24.77 | 24.69 |
| CDX94665 | Canola | nucleus | 17.96 | 24.68 |
| CDY28208 | Canola | cytosol | 17.65 | 24.57 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.98 | 24.48 |
| CDY68603 | Canola | cytosol | 18.27 | 24.38 |
| CDY20473 | Canola | nucleus, plastid | 25.08 | 24.25 |
| CDX74533 | Canola | cytosol | 21.67 | 23.97 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.98 | 23.75 |
| CDX80258 | Canola | plastid | 26.01 | 23.66 |
| CDX94901 | Canola | cytosol | 22.91 | 23.57 |
| CDX94342 | Canola | mitochondrion, nucleus | 27.55 | 23.0 |
| CDY53450 | Canola | cytosol | 22.6 | 22.67 |
| CDY01669 | Canola | plastid | 22.29 | 22.29 |
| CDY07641 | Canola | nucleus | 25.7 | 22.19 |
| CDY61251 | Canola | cytosol | 24.77 | 22.16 |
| CDY24951 | Canola | nucleus | 25.7 | 22.13 |
| CDX88709 | Canola | cytosol, plastid | 26.93 | 22.08 |
| CDY33046 | Canola | plastid | 23.22 | 21.93 |
| CDX99105 | Canola | cytosol, plastid | 21.36 | 21.3 |
| CDY48679 | Canola | cytosol, plastid | 21.67 | 20.96 |
| CDY69134 | Canola | cytosol | 15.48 | 17.18 |
| CDX78323 | Canola | cytosol | 15.17 | 17.01 |
| CDY58938 | Canola | nucleus | 23.22 | 17.01 |
| CDY03622 | Canola | nucleus | 23.22 | 16.82 |
| CDX90972 | Canola | cytosol | 16.41 | 15.82 |
| CDY01221 | Canola | cytosol | 10.53 | 15.6 |
| CDX85531 | Canola | cytosol | 15.79 | 14.87 |
| CDY11934 | Canola | nucleus | 29.41 | 14.57 |
| CDX69973 | Canola | cytosol | 16.1 | 14.44 |
| CDY21513 | Canola | cytosol | 15.79 | 14.33 |
| CDX69496 | Canola | cytosol | 12.38 | 13.89 |
| CDY23599 | Canola | golgi, mitochondrion | 26.01 | 13.79 |
| CDY26465 | Canola | cytosol | 13.93 | 13.27 |
| CDY34722 | Canola | cytosol | 15.79 | 13.08 |
| CDY02194 | Canola | peroxisome | 16.1 | 13.07 |
| CDY34721 | Canola | cytosol | 15.48 | 12.82 |
| CDY51628 | Canola | peroxisome | 16.1 | 12.81 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078GFV9 |
| UniProt:A0A078GFV9 | EnsemblPlants:CDY25360 | ProteinID:CDY25360 | ProteinID:CDY25360.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00029480001 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 |
| PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF1 | SMART:SM00184 |
| SMART:SM00744 | SUPFAM:SSF57850 | UniParc:UPI0004EE4393 | InterPro:Znf_RING | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g19240DBnaA05g19240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFV9]
Coordinates
chrLK032174:+:239210..241312
Molecular Weight (calculated)
34203.6 Da
IEP (calculated)
4.294
GRAVY (calculated)
-0.488
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGNSAAS TAPVVEKMFF CYQCNHTVNI SISSAADPFC PLCSGGFLEE YDEPVPTLPQ NLNPAASDFF PMADPFSTLL PLLFGSSAPP PSSANPSFFG
101: PRSAQNQPQG GAFDPVSFLQ NHLQHLQSSG THVQFLIEDH PLDPSNQAPG HLGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIEGLP TVKVSKDMLK
201: SEMNQCAVCM DEFEDGGDVK QMPCKHVFHQ DCLMPWLELH NSCPVCRYEL PTDDPDYESR GQGQGGQTSG DGGQTPRSFS VQLPWTFGGR RDGSGSGPPG
301: SGGGGGAGGG GGSNLGTRQE DLD
101: PRSAQNQPQG GAFDPVSFLQ NHLQHLQSSG THVQFLIEDH PLDPSNQAPG HLGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIEGLP TVKVSKDMLK
201: SEMNQCAVCM DEFEDGGDVK QMPCKHVFHQ DCLMPWLELH NSCPVCRYEL PTDDPDYESR GQGQGGQTSG DGGQTPRSFS VQLPWTFGGR RDGSGSGPPG
301: SGGGGGAGGG GGSNLGTRQE DLD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.