Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42507 | Canola | cytosol | 81.85 | 65.19 |
| CDX82271 | Canola | cytosol | 37.41 | 47.42 |
| CDY36069 | Canola | cytosol | 37.41 | 46.54 |
| CDY72364 | Canola | cytosol | 36.67 | 44.59 |
| CDY24592 | Canola | nucleus | 50.37 | 42.37 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 50.0 | 41.8 |
| CDY33437 | Canola | cytosol | 50.0 | 41.67 |
| KRH36132 | Soybean | nucleus | 41.85 | 39.51 |
| KRG90622 | Soybean | nucleus | 40.74 | 36.91 |
| AT3G19950.2 | Thale cress | cytosol | 52.22 | 36.53 |
| Solyc04g009170.1.1 | Tomato | nucleus | 38.15 | 33.33 |
| PGSC0003DMT400082489 | Potato | nucleus | 38.52 | 32.3 |
| Zm00001d045625_P001 | Maize | cytosol | 36.67 | 31.94 |
| EER89027 | Sorghum | nucleus | 37.41 | 31.46 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 42.59 | 31.17 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 37.78 | 30.91 |
| Os06t0101300-01 | Rice | nucleus | 38.15 | 30.47 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 37.78 | 30.45 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 38.15 | 28.85 |
| CDX75998 | Canola | nucleus | 18.15 | 25.52 |
| CDY22483 | Canola | mitochondrion | 27.78 | 24.75 |
| CDY23878 | Canola | mitochondrion, nucleus | 27.78 | 24.59 |
| CDY46577 | Canola | nucleus | 26.3 | 24.4 |
| CDY32333 | Canola | cytosol | 21.11 | 24.26 |
| CDY10554 | Canola | cytosol | 27.04 | 23.93 |
| CDY26096 | Canola | nucleus | 25.93 | 23.81 |
| CDY35437 | Canola | mitochondrion, nucleus | 27.78 | 23.66 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 25.19 | 23.45 |
| CDX72127 | Canola | mitochondrion | 27.41 | 23.42 |
| CDX79968 | Canola | mitochondrion, nucleus | 25.56 | 23.23 |
| CDY27204 | Canola | mitochondrion, nucleus | 26.67 | 23.08 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 25.19 | 22.74 |
| CDX94665 | Canola | nucleus | 19.63 | 22.55 |
| CDY43991 | Canola | nucleus | 25.56 | 22.33 |
| CDY56022 | Canola | nucleus | 25.56 | 22.04 |
| CDX94901 | Canola | cytosol | 25.56 | 21.97 |
| CDX74533 | Canola | cytosol | 23.7 | 21.92 |
| CDY68603 | Canola | cytosol | 19.63 | 21.9 |
| CDY56080 | Canola | cytosol | 22.96 | 21.83 |
| CDX92768 | Canola | nucleus | 24.81 | 21.68 |
| CDY32791 | Canola | nucleus | 27.78 | 21.31 |
| CDY08249 | Canola | cytosol | 26.3 | 21.19 |
| CDY50031 | Canola | cytosol | 22.59 | 21.03 |
| CDX92770 | Canola | nucleus | 24.81 | 20.68 |
| CDY42740 | Canola | nucleus | 24.07 | 20.19 |
| CDY01669 | Canola | plastid | 24.07 | 20.12 |
| CDY20473 | Canola | nucleus, plastid | 24.44 | 19.76 |
| CDX74839 | Canola | cytosol, plastid | 23.33 | 19.44 |
| CDY28208 | Canola | cytosol | 15.93 | 18.53 |
| CDY56081 | Canola | nucleus | 16.3 | 18.41 |
| CDX80258 | Canola | plastid | 24.07 | 18.31 |
| CDX89343 | Canola | cytosol, mitochondrion | 23.33 | 17.9 |
| CDY24951 | Canola | nucleus | 24.81 | 17.87 |
| CDY61251 | Canola | cytosol | 23.7 | 17.73 |
| CDY07641 | Canola | nucleus | 24.44 | 17.65 |
| CDX99105 | Canola | cytosol, plastid | 21.11 | 17.59 |
| CDY53450 | Canola | cytosol | 20.74 | 17.39 |
| CDX94342 | Canola | mitochondrion, nucleus | 24.81 | 17.31 |
| CDX88709 | Canola | cytosol, plastid | 25.19 | 17.26 |
| CDY33046 | Canola | plastid | 21.11 | 16.67 |
| CDY69134 | Canola | cytosol | 17.41 | 16.15 |
| CDX90972 | Canola | cytosol | 19.63 | 15.82 |
| CDX78323 | Canola | cytosol | 16.67 | 15.62 |
| CDY48679 | Canola | cytosol, plastid | 19.26 | 15.57 |
| CDX85531 | Canola | cytosol | 19.26 | 15.16 |
| CDY58938 | Canola | nucleus | 24.07 | 14.74 |
| CDX69496 | Canola | cytosol | 15.56 | 14.58 |
| CDY03622 | Canola | nucleus | 24.07 | 14.57 |
| CDY34721 | Canola | cytosol | 19.63 | 13.59 |
| CDY34722 | Canola | cytosol | 19.26 | 13.33 |
| CDY26465 | Canola | cytosol | 16.67 | 13.27 |
| CDY02194 | Canola | peroxisome | 19.26 | 13.07 |
| CDY51628 | Canola | peroxisome | 19.26 | 12.81 |
| CDX69973 | Canola | cytosol | 17.04 | 12.78 |
| CDY21513 | Canola | cytosol | 16.67 | 12.64 |
| CDY01221 | Canola | cytosol | 9.63 | 11.93 |
| CDY11934 | Canola | nucleus | 28.52 | 11.81 |
| CDY23599 | Canola | golgi, mitochondrion | 25.56 | 11.33 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078G8L4 | UniProt:A0A078G8L4 | EnsemblPlants:CDY22790 | ProteinID:CDY22790 |
| ProteinID:CDY22790.1 | EnsemblPlantsGene:GSBRNA2T00021130001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE8002 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaA06g02870DBnaA06g02870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8L4]
Coordinates
chrLK032136:+:38708..40580
Molecular Weight (calculated)
30471.1 Da
IEP (calculated)
5.805
GRAVY (calculated)
-0.379
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGNSTES SVATAETDKT FFCHQCNQTI TITISPTADP FCPLCNLGFL EEHTDPIFPI SDPPPSSRLP FIPVMDFTNL DHDPDAFDPV SFIHSHLQQL
101: QSSGVNVQML FENHHHHHHG DYFGRGGLED LIQQLGEDDP NRYGPPPASK SAVDALPTVK VTMRSEMNQC AVCTDEFEDG VSVKEMPCGH VYHQDCLIPW
201: LRMRNTCPVC RHELRTDDTS CLPLCFDFGA EKAELQPKSL FCLDWKKTCK ETICLHSKKL VRRRKLYICF
101: QSSGVNVQML FENHHHHHHG DYFGRGGLED LIQQLGEDDP NRYGPPPASK SAVDALPTVK VTMRSEMNQC AVCTDEFEDG VSVKEMPCGH VYHQDCLIPW
201: LRMRNTCPVC RHELRTDDTS CLPLCFDFGA EKAELQPKSL FCLDWKKTCK ETICLHSKKL VRRRKLYICF
001: MSSGVNSTGS AAAAPEVDKM FFCYQCNQTV TISISSSADP FCPICNQGFL EEYEDPNPNQ SLNFNPNSSD SFFPMADPFS TLLPLIFGSS AAAPSGMDFM
101: SLFGPSMQPQ ARSTQQNPQS DAFDPFTFLQ NHLQTLRSSG THFEFVIENH PSDPGNRMPG NFGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIDALP
201: TVKVTKDMLK SEMNQCAVCM DEFEDGSDVK QMPCKHVFHQ DCLLPWLELH NSCPVCRFEL PTDDPDYENR SQGSQGSGDG QGSVEGQQTP RFSIQLPWPF
301: RRQDGSGSGS GAPGTGGGNL ETRGEDLD
101: SLFGPSMQPQ ARSTQQNPQS DAFDPFTFLQ NHLQTLRSSG THFEFVIENH PSDPGNRMPG NFGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIDALP
201: TVKVTKDMLK SEMNQCAVCM DEFEDGSDVK QMPCKHVFHQ DCLLPWLELH NSCPVCRFEL PTDDPDYENR SQGSQGSGDG QGSVEGQQTP RFSIQLPWPF
301: RRQDGSGSGS GAPGTGGGNL ETRGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.