Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037999.1-P | Field mustard | nucleus | 99.66 | 99.66 |
| CDY56081 | Canola | nucleus | 66.21 | 80.33 |
| CDY28208 | Canola | cytosol | 55.52 | 69.4 |
| CDY56080 | Canola | cytosol | 66.9 | 68.31 |
| CDY08249 | Canola | cytosol | 53.45 | 46.27 |
| CDY10554 | Canola | cytosol | 47.24 | 44.92 |
| CDY26096 | Canola | nucleus | 45.17 | 44.56 |
| CDY56022 | Canola | nucleus | 47.93 | 44.41 |
| AT1G55530.2 | Thale cress | nucleus | 49.31 | 40.74 |
| CDY43991 | Canola | nucleus | 41.72 | 39.16 |
| CDY46577 | Canola | nucleus | 38.97 | 38.83 |
| CDX92768 | Canola | nucleus | 35.52 | 33.33 |
| GSMUA_Achr11P... | Banana | nucleus | 30.34 | 32.59 |
| CDY32791 | Canola | nucleus | 39.31 | 32.39 |
| CDY42740 | Canola | nucleus | 35.86 | 32.3 |
| CDX92770 | Canola | nucleus | 35.86 | 32.1 |
| Zm00001d010635_P001 | Maize | nucleus | 33.79 | 31.41 |
| CDX89343 | Canola | cytosol, mitochondrion | 36.21 | 29.83 |
| CDX82271 | Canola | cytosol | 21.72 | 29.58 |
| Os05t0488800-01 | Rice | nucleus | 32.76 | 29.41 |
| CDY72364 | Canola | cytosol | 22.07 | 28.83 |
| Os03t0812200-01 | Rice | nucleus | 36.55 | 28.73 |
| Zm00001d038528_P001 | Maize | cytosol | 32.76 | 28.53 |
| CDY36069 | Canola | cytosol | 21.03 | 28.11 |
| CDX94342 | Canola | mitochondrion, nucleus | 37.24 | 27.91 |
| Zm00001d013005_P002 | Maize | nucleus | 35.17 | 27.49 |
| KXG37275 | Sorghum | nucleus | 36.21 | 27.42 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 31.38 | 27.41 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 31.38 | 27.41 |
| CDY32333 | Canola | cytosol | 21.03 | 25.96 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 35.17 | 25.63 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 35.52 | 25.62 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 35.52 | 25.5 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 35.17 | 25.25 |
| CDY68603 | Canola | cytosol | 21.03 | 25.21 |
| CDX94665 | Canola | nucleus | 20.34 | 25.11 |
| KXG22238 | Sorghum | plastid | 33.1 | 24.68 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 26.55 | 23.84 |
| HORVU1Hr1G068950.2 | Barley | golgi | 31.72 | 23.83 |
| CDY33437 | Canola | cytosol | 26.55 | 23.77 |
| CDY24592 | Canola | nucleus | 26.21 | 23.68 |
| CDX75998 | Canola | nucleus | 15.17 | 22.92 |
| CDY22483 | Canola | mitochondrion | 23.79 | 22.77 |
| CDY22790 | Canola | nucleus | 21.03 | 22.59 |
| CDY35437 | Canola | mitochondrion, nucleus | 24.48 | 22.4 |
| CDY23878 | Canola | mitochondrion, nucleus | 23.45 | 22.3 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 22.07 | 22.07 |
| CDY53450 | Canola | cytosol | 23.79 | 21.43 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 22.07 | 21.4 |
| CDX79968 | Canola | mitochondrion, nucleus | 21.72 | 21.21 |
| CDX74533 | Canola | cytosol | 21.03 | 20.89 |
| CDX72127 | Canola | mitochondrion | 22.41 | 20.57 |
| CDY27204 | Canola | mitochondrion, nucleus | 22.07 | 20.51 |
| CDY61251 | Canola | cytosol | 25.52 | 20.5 |
| CDY42507 | Canola | cytosol | 23.79 | 20.35 |
| CDY23599 | Canola | golgi, mitochondrion | 42.07 | 20.03 |
| CDX80258 | Canola | plastid | 24.48 | 20.0 |
| CDX88709 | Canola | cytosol, plastid | 26.55 | 19.54 |
| CDY20473 | Canola | nucleus, plastid | 22.07 | 19.16 |
| CDX74839 | Canola | cytosol, plastid | 21.38 | 19.14 |
| CDY07641 | Canola | nucleus | 24.14 | 18.72 |
| CDY11934 | Canola | nucleus | 42.07 | 18.71 |
| CDY01669 | Canola | plastid | 20.69 | 18.58 |
| CDY48679 | Canola | cytosol, plastid | 21.38 | 18.56 |
| CDX99105 | Canola | cytosol, plastid | 20.69 | 18.52 |
| CDY24951 | Canola | nucleus | 23.79 | 18.4 |
| CDY33046 | Canola | plastid | 20.69 | 17.54 |
| CDX94901 | Canola | cytosol | 18.28 | 16.88 |
| CDY58938 | Canola | nucleus | 21.38 | 14.06 |
| CDY03622 | Canola | nucleus | 21.38 | 13.9 |
| CDX69973 | Canola | cytosol | 16.21 | 13.06 |
| CDY21513 | Canola | cytosol | 15.86 | 12.92 |
| CDX69496 | Canola | cytosol | 12.41 | 12.5 |
| CDX78323 | Canola | cytosol | 12.41 | 12.5 |
| CDY01221 | Canola | cytosol | 9.31 | 12.39 |
| CDY69134 | Canola | cytosol | 12.07 | 12.03 |
| CDY26465 | Canola | cytosol | 13.79 | 11.8 |
| CDY34722 | Canola | cytosol | 15.52 | 11.54 |
| CDY34721 | Canola | cytosol | 15.52 | 11.54 |
| CDX90972 | Canola | cytosol | 12.76 | 11.04 |
| CDY02194 | Canola | peroxisome | 14.48 | 10.55 |
| CDY51628 | Canola | peroxisome | 14.48 | 10.34 |
| CDX85531 | Canola | cytosol | 12.07 | 10.2 |
Protein Annotations
| EnsemblPlants:CDY50031 | EnsemblPlantsGene:GSBRNA2T00095784001 | Gene3D:3.30.40.10 | GO:A0A078IJA3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY50031 | ProteinID:CDY50031.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEC80B | UniProt:A0A078IJA3 | MapMan:35.1 | : | : | : |
Description
BnaA06g00320DBnaA06g00320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJA3]
Coordinates
chrLK032875:+:84905..86380
Molecular Weight (calculated)
31771.2 Da
IEP (calculated)
4.241
GRAVY (calculated)
-0.440
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEETTAYWC HTCSQTVTSL TTEEAGIKCP FCQSGFLEEM QQREDTNVHR PMDSILTPIF MEMMNNSARI HPGADMDSQL QEILRRRGRR PVSIDQLLQG
101: IYAGLTLAPA AAAADDNNRE RGRVIVTNPY NQIVAVPSSA VSNTLPPVAG SLSEYFIGPE FEAMLESLTE TDPRRYGTPP ARRDAFEALA SVEIKEAEAG
201: LECCVCLDDF EMGTVGKQMP CKHIFHSDCL LPWLQLHSSC PVCRYQLPTA EDETNGGGGG SSSTSSSSQG SESTRDDDGD RSMLDDPMEA
101: IYAGLTLAPA AAAADDNNRE RGRVIVTNPY NQIVAVPSSA VSNTLPPVAG SLSEYFIGPE FEAMLESLTE TDPRRYGTPP ARRDAFEALA SVEIKEAEAG
201: LECCVCLDDF EMGTVGKQMP CKHIFHSDCL LPWLQLHSSC PVCRYQLPTA EDETNGGGGG SSSTSSSSQG SESTRDDDGD RSMLDDPMEA
001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.