Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037800.1-P | Field mustard | cytosol | 99.33 | 98.34 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 92.64 | 95.52 |
| AT5G64920.1 | Thale cress | cytosol | 81.94 | 73.35 |
| CDY32333 | Canola | cytosol | 36.45 | 46.38 |
| KRG90607 | Soybean | nucleus | 52.17 | 46.29 |
| KRH36150 | Soybean | nucleus | 50.84 | 45.65 |
| CDX94665 | Canola | nucleus | 34.11 | 43.4 |
| CDY68603 | Canola | cytosol | 34.78 | 42.98 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 46.82 | 41.92 |
| PGSC0003DMT400081469 | Potato | nucleus | 51.51 | 40.74 |
| Solyc09g074460.1.1 | Tomato | nucleus | 51.17 | 40.58 |
| CDY36069 | Canola | cytosol | 19.4 | 26.73 |
| CDX82271 | Canola | cytosol | 18.73 | 26.29 |
| CDY72364 | Canola | cytosol | 18.73 | 25.23 |
| CDY22790 | Canola | nucleus | 22.74 | 25.19 |
| CDY43991 | Canola | nucleus | 25.08 | 24.27 |
| CDY26096 | Canola | nucleus | 22.74 | 23.13 |
| CDY56081 | Canola | nucleus | 17.73 | 22.18 |
| CDY24592 | Canola | nucleus | 23.75 | 22.12 |
| CDY50031 | Canola | cytosol | 21.4 | 22.07 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 23.75 | 21.98 |
| CDY10554 | Canola | cytosol | 22.41 | 21.97 |
| CDY33437 | Canola | cytosol | 23.75 | 21.91 |
| CDX75998 | Canola | nucleus | 14.05 | 21.88 |
| CDY56080 | Canola | cytosol | 20.4 | 21.48 |
| CDY22483 | Canola | mitochondrion | 21.74 | 21.45 |
| CDY56022 | Canola | nucleus | 22.41 | 21.41 |
| CDY46577 | Canola | nucleus | 20.74 | 21.31 |
| CDY28208 | Canola | cytosol | 16.05 | 20.69 |
| CDX99105 | Canola | cytosol, plastid | 22.41 | 20.68 |
| CDY08249 | Canola | cytosol | 23.08 | 20.6 |
| CDY23878 | Canola | mitochondrion, nucleus | 20.74 | 20.33 |
| CDY35437 | Canola | mitochondrion, nucleus | 21.4 | 20.19 |
| CDY20473 | Canola | nucleus, plastid | 22.41 | 20.06 |
| CDY42507 | Canola | cytosol | 22.41 | 19.76 |
| CDX74839 | Canola | cytosol, plastid | 21.4 | 19.75 |
| CDY61251 | Canola | cytosol | 23.75 | 19.67 |
| CDX74533 | Canola | cytosol | 19.06 | 19.52 |
| CDX79968 | Canola | mitochondrion, nucleus | 19.06 | 19.19 |
| CDX92768 | Canola | nucleus | 19.73 | 19.09 |
| CDY32791 | Canola | nucleus | 22.41 | 19.03 |
| CDY69134 | Canola | cytosol | 18.39 | 18.9 |
| CDX72127 | Canola | mitochondrion | 19.73 | 18.67 |
| CDY53450 | Canola | cytosol | 19.73 | 18.32 |
| CDX80258 | Canola | plastid | 21.74 | 18.31 |
| CDY27204 | Canola | mitochondrion, nucleus | 19.06 | 18.27 |
| CDX92770 | Canola | nucleus | 19.73 | 18.21 |
| CDY24951 | Canola | nucleus | 22.74 | 18.13 |
| CDX88709 | Canola | cytosol, plastid | 23.75 | 18.02 |
| CDY42740 | Canola | nucleus | 19.4 | 18.01 |
| CDY01669 | Canola | plastid | 19.4 | 17.96 |
| CDY07641 | Canola | nucleus | 22.41 | 17.91 |
| CDX89343 | Canola | cytosol, mitochondrion | 21.07 | 17.9 |
| CDX78323 | Canola | cytosol | 17.06 | 17.71 |
| CDY33046 | Canola | plastid | 20.07 | 17.54 |
| CDX94342 | Canola | mitochondrion, nucleus | 22.41 | 17.31 |
| CDY34722 | Canola | cytosol | 22.41 | 17.18 |
| CDY48679 | Canola | cytosol, plastid | 18.73 | 16.77 |
| CDY34721 | Canola | cytosol | 21.74 | 16.67 |
| CDY26465 | Canola | cytosol | 18.73 | 16.52 |
| CDX90972 | Canola | cytosol | 18.06 | 16.12 |
| CDY21513 | Canola | cytosol | 19.06 | 16.01 |
| CDX69973 | Canola | cytosol | 19.06 | 15.83 |
| CDX69496 | Canola | cytosol | 14.72 | 15.28 |
| CDY51628 | Canola | peroxisome | 20.74 | 15.27 |
| CDX85531 | Canola | cytosol | 17.39 | 15.16 |
| CDY02194 | Canola | peroxisome | 20.07 | 15.08 |
| CDY58938 | Canola | nucleus | 21.74 | 14.74 |
| CDY01221 | Canola | cytosol | 10.7 | 14.68 |
| CDX94901 | Canola | cytosol | 15.38 | 14.65 |
| CDY03622 | Canola | nucleus | 21.4 | 14.35 |
| CDY23599 | Canola | golgi, mitochondrion | 25.08 | 12.32 |
| CDY11934 | Canola | nucleus | 23.08 | 10.58 |
Protein Annotations
| EnsemblPlants:CDY18690 | EnsemblPlantsGene:GSBRNA2T00005767001 | Gene3D:3.30.40.10 | GO:A0A078FW90 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR44679 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY18690 | ProteinID:CDY18690.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEFF97 | UniProt:A0A078FW90 | MapMan:35.1 | : | : | : |
Description
BnaA09g07050DBnaA09g07050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FW90]
Coordinates
chrLK032087:+:537839..539074
Molecular Weight (calculated)
32867.1 Da
IEP (calculated)
4.190
GRAVY (calculated)
-0.515
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAPSDDAH WCYHCNKRVV VETLDDFVVC SECNKGFVES IHPIPRSPPL SPDLRVEDSS IGSHFLQMLR LLTHAPSPPR LDVLSYEDEF FGLEINSRNE
101: EDEDDEEEEE EEEEGEDRGG EMFPITTRSI TGRNRILDWA EILMGIEDNS DRYAVNAADY VDDGAGYEAL LQNLAEGDGG GGGGGRRGAP PAAKSAIEAL
201: ETFEVCSDEK MMMVVVCAVC KDGMVIGETV KKLPCGHCYH GNCILPWLGT RNSCPVCRFQ LKTDDAEYEE EEARKKRTTT TTALTDSGAS SSSSASSRF
101: EDEDDEEEEE EEEEGEDRGG EMFPITTRSI TGRNRILDWA EILMGIEDNS DRYAVNAADY VDDGAGYEAL LQNLAEGDGG GGGGGRRGAP PAAKSAIEAL
201: ETFEVCSDEK MMMVVVCAVC KDGMVIGETV KKLPCGHCYH GNCILPWLGT RNSCPVCRFQ LKTDDAEYEE EEARKKRTTT TTALTDSGAS SSSSASSRF
001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
Arabidopsis Description
CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.