Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY06478 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | CDY06478 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009323.1-P | Field mustard | cytosol | 91.85 | 86.28 |
| CDX69973 | Canola | cytosol | 87.08 | 86.11 |
| CDX78323 | Canola | cytosol | 54.78 | 67.71 |
| CDY69134 | Canola | cytosol | 54.78 | 67.01 |
| AT5G08139.1 | Thale cress | cytosol | 61.8 | 58.51 |
| CDY02194 | Canola | peroxisome | 43.54 | 38.94 |
| CDY51628 | Canola | peroxisome | 42.7 | 37.44 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 11.52 | 33.06 |
| KRH56750 | Soybean | cytosol | 31.46 | 32.75 |
| KRH03189 | Soybean | nucleus | 32.02 | 32.11 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 35.96 | 29.16 |
| PGSC0003DMT400063293 | Potato | nucleus | 31.46 | 25.93 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 27.53 | 24.75 |
| Solyc03g114680.2.1 | Tomato | nucleus | 32.3 | 23.09 |
| CDX75998 | Canola | nucleus | 12.36 | 22.92 |
| CDX69496 | Canola | cytosol | 17.13 | 21.18 |
| CDY72364 | Canola | cytosol | 13.2 | 21.17 |
| CDX82271 | Canola | cytosol | 12.64 | 21.13 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 17.7 | 20.52 |
| CDY26465 | Canola | cytosol | 19.38 | 20.35 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 16.57 | 20.34 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.17 | 20.07 |
| CDY32333 | Canola | cytosol | 13.2 | 20.0 |
| CDY34722 | Canola | cytosol | 21.91 | 20.0 |
| CDY68603 | Canola | cytosol | 13.48 | 19.83 |
| CDY36069 | Canola | cytosol | 12.08 | 19.82 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 14.89 | 19.7 |
| CDX94665 | Canola | nucleus | 12.92 | 19.57 |
| CDY34721 | Canola | cytosol | 21.35 | 19.49 |
| OQU85475 | Sorghum | cytosol | 17.42 | 19.38 |
| TraesCS7B01G144100.1 | Wheat | plastid | 14.61 | 19.33 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.57 | 19.22 |
| CDX79968 | Canola | mitochondrion, nucleus | 16.01 | 19.19 |
| Os08t0487500-01 | Rice | plastid | 14.61 | 19.19 |
| EES14331 | Sorghum | plastid | 15.73 | 19.11 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 16.01 | 19.06 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 15.45 | 19.03 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 16.57 | 18.97 |
| CDY22483 | Canola | mitochondrion | 16.01 | 18.81 |
| Zm00001d051736_P001 | Maize | cytosol | 17.42 | 18.79 |
| CDY23878 | Canola | mitochondrion, nucleus | 16.01 | 18.69 |
| CDY35437 | Canola | mitochondrion, nucleus | 16.57 | 18.61 |
| CDY28208 | Canola | cytosol | 12.08 | 18.53 |
| CDX90972 | Canola | cytosol | 16.85 | 17.91 |
| CDX85531 | Canola | cytosol | 17.13 | 17.78 |
| CDY27204 | Canola | mitochondrion, nucleus | 15.45 | 17.63 |
| CDY46577 | Canola | nucleus | 14.33 | 17.53 |
| EER90075 | Sorghum | nucleus | 14.89 | 17.49 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 25.56 | 17.43 |
| CDX92768 | Canola | nucleus | 14.89 | 17.15 |
| CDX72127 | Canola | mitochondrion | 14.89 | 16.77 |
| CDY42740 | Canola | nucleus | 15.17 | 16.77 |
| CDY22790 | Canola | nucleus | 12.64 | 16.67 |
| CDX94901 | Canola | cytosol | 14.61 | 16.56 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 16.85 | 16.48 |
| Zm00001d046663_P001 | Maize | cytosol | 13.76 | 16.44 |
| CDX92770 | Canola | nucleus | 14.89 | 16.36 |
| CDY56081 | Canola | nucleus | 10.96 | 16.32 |
| CDY01221 | Canola | cytosol | 9.83 | 16.05 |
| CDY24592 | Canola | nucleus | 14.33 | 15.89 |
| CDY50031 | Canola | cytosol | 12.92 | 15.86 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 14.33 | 15.79 |
| CDY43991 | Canola | nucleus | 13.48 | 15.53 |
| CDY56080 | Canola | cytosol | 12.36 | 15.49 |
| CDY20473 | Canola | nucleus, plastid | 14.33 | 15.27 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.57 | 15.25 |
| CDY33437 | Canola | cytosol | 13.76 | 15.12 |
| CDX99105 | Canola | cytosol, plastid | 13.76 | 15.12 |
| CDY32791 | Canola | nucleus | 14.89 | 15.06 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 13.76 | 15.03 |
| CDY56022 | Canola | nucleus | 13.2 | 15.02 |
| CDY26096 | Canola | nucleus | 12.36 | 14.97 |
| CDY61251 | Canola | cytosol | 15.17 | 14.96 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 14.61 | 14.94 |
| CDY53450 | Canola | cytosol | 13.48 | 14.91 |
| Zm00001d053704_P001 | Maize | cytosol | 14.89 | 14.89 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 13.76 | 14.85 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 13.76 | 14.8 |
| CDY10554 | Canola | cytosol | 12.64 | 14.75 |
| CDX80258 | Canola | plastid | 14.33 | 14.37 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 14.89 | 14.32 |
| CDX74839 | Canola | cytosol, plastid | 12.92 | 14.2 |
| CDY48679 | Canola | cytosol, plastid | 13.2 | 14.07 |
| CDX88709 | Canola | cytosol, plastid | 15.45 | 13.96 |
| CDY07641 | Canola | nucleus | 14.61 | 13.9 |
| CDY24951 | Canola | nucleus | 14.61 | 13.87 |
| CDX74533 | Canola | cytosol | 11.24 | 13.7 |
| CDY58938 | Canola | nucleus | 16.85 | 13.61 |
| CDY42507 | Canola | cytosol | 12.92 | 13.57 |
| CDX89343 | Canola | cytosol, mitochondrion | 13.2 | 13.35 |
| CDY01669 | Canola | plastid | 12.08 | 13.31 |
| CDY03622 | Canola | nucleus | 16.57 | 13.23 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 14.89 | 13.22 |
| CDY08249 | Canola | cytosol | 12.36 | 13.13 |
| Os02t0191500-01 | Rice | nucleus | 13.76 | 13.07 |
| CDX94342 | Canola | mitochondrion, nucleus | 14.04 | 12.92 |
| CDY33046 | Canola | plastid | 12.36 | 12.87 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 13.76 | 12.79 |
| CDY11934 | Canola | nucleus | 15.45 | 8.44 |
| CDY23599 | Canola | golgi, mitochondrion | 13.48 | 7.88 |
Protein Annotations
| EnsemblPlants:CDY21513 | EnsemblPlantsGene:GSBRNA2T00015952001 | Gene3D:3.30.40.10 | GO:A0A078G9Y5 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY21513 | ProteinID:CDY21513.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF4BB2 |
| UniProt:A0A078G9Y5 | MapMan:35.1 | : | : | : | : |
Description
BnaC09g47790DBnaC09g47790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9Y5]
Coordinates
chrLK032122:+:45669..47176
Molecular Weight (calculated)
39630.9 Da
IEP (calculated)
3.697
GRAVY (calculated)
-0.598
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSHQRVEQ SQVTLPRDDD NEGTESRDVI VGNCDVVTEL GLGSGTVFIE NIGGDSDVVD VNNLNDFDEP DDDDLEVRGI TSMGSEIRLI TIESGSDDDD
101: HDHENEREVW GIDLNDDDDD DDVNVTIPLC WDSLQVEDRG VAAEEFDWEE VDGGGDGGLE DEREIEILTG FAEADIDEDT SVSIFISPMI SSEGLATGER
201: AEGSGNNLEW EVLLNSHTLE INFDVGNREI FLTGDNEVNI NAPEYDMLFE QFSQAGLANL RRFPPASRSF IKDLPMVQLD VEKDEGAFCA VCKDEMDIGT
301: EAVGLPCDHK YHTECIVPWL KTRNTCPVCR YELPTDNTNY EQRKSQRTTS SSSNIW
101: HDHENEREVW GIDLNDDDDD DDVNVTIPLC WDSLQVEDRG VAAEEFDWEE VDGGGDGGLE DEREIEILTG FAEADIDEDT SVSIFISPMI SSEGLATGER
201: AEGSGNNLEW EVLLNSHTLE INFDVGNREI FLTGDNEVNI NAPEYDMLFE QFSQAGLANL RRFPPASRSF IKDLPMVQLD VEKDEGAFCA VCKDEMDIGT
301: EAVGLPCDHK YHTECIVPWL KTRNTCPVCR YELPTDNTNY EQRKSQRTTS SSSNIW
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.