CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74533	Canola	cytosol	80.5	89.04
AT1G60360.1	Thale cress	nucleus	75.23	74.31
VIT_18s0001g03270.t01	Wine grape	nucleus	44.27	42.94
PGSC0003DMT400002370	Potato	cytosol	41.49	41.49
Solyc11g012950.1.1	Tomato	cytosol	42.41	41.14
KRH64713	Soybean	nucleus	41.8	38.35
GSMUA_Achr7P13060_001	Banana	mitochondrion	29.1	38.21
TraesCS7D01G170800.1	Wheat	mitochondrion	32.2	32.5
HORVU0Hr1G019650.1	Barley	mitochondrion	31.89	32.49
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	31.89	32.29
TraesCS7B01G074800.1	Wheat	mitochondrion	31.89	31.99
TraesCS6D01G309800.1	Wheat	mitochondrion	30.96	31.45
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.51	30.88
Os02t0767600-00	Rice	mitochondrion	31.27	30.79
EER89401	Sorghum	mitochondrion, nucleus	31.58	30.54
TraesCS6A01G330700.1	Wheat	mitochondrion	30.65	30.37
Zm00001d018190_P001	Maize	mitochondrion	31.27	30.33
Zm00001d052154_P001	Maize	mitochondrion	29.41	29.87
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	30.34	29.43
TraesCS6B01G361600.1	Wheat	mitochondrion	30.65	29.38
KXG31176	Sorghum	plastid	30.65	27.81
CDY36069	Canola	cytosol	18.58	27.65
CDX75998	Canola	nucleus	16.41	27.6
CDX82271	Canola	cytosol	17.96	27.23
CDY72364	Canola	cytosol	18.58	27.03
CDY23878	Canola	mitochondrion, nucleus	25.08	26.56
CDY22483	Canola	mitochondrion	24.15	25.74
CDY27204	Canola	mitochondrion, nucleus	24.77	25.64
CDX72127	Canola	mitochondrion	24.46	25.0
CDY35437	Canola	mitochondrion, nucleus	24.46	24.92
CDX79968	Canola	mitochondrion, nucleus	22.91	24.92
CDY46577	Canola	nucleus	21.98	24.4
CDY22790	Canola	nucleus	20.12	24.07
CDX80258	Canola	plastid	26.32	23.94
CDY53450	Canola	cytosol	23.84	23.91
CDX74839	Canola	cytosol, plastid	23.84	23.77
CDY33437	Canola	cytosol	23.53	23.46
CDY20473	Canola	nucleus, plastid	23.84	23.05
CDY24592	Canola	nucleus	22.6	22.74
CDX94901	Canola	cytosol	21.67	22.29
CDY25360	Canola	cytosol, nucleus, plastid	22.29	22.29
CDY33046	Canola	plastid	23.53	22.22
CDY24951	Canola	nucleus	25.7	22.13
CDY32333	Canola	cytosol	16.1	22.13
CDY07641	Canola	nucleus	25.39	21.93
CDY48679	Canola	cytosol, plastid	22.6	21.86
CDY10554	Canola	cytosol	20.43	21.64
CDX88709	Canola	cytosol, plastid	26.32	21.57
CDY61251	Canola	cytosol	23.84	21.33
CDX94665	Canola	nucleus	15.48	21.28
CDX92768	Canola	nucleus	20.12	21.04
CDY42507	Canola	cytosol	21.98	20.94
CDY26096	Canola	nucleus	18.89	20.75
CDY32791	Canola	nucleus	22.6	20.74
CDY43991	Canola	nucleus	19.81	20.71
CDY50031	Canola	cytosol	18.58	20.69
CDY68603	Canola	cytosol	15.48	20.66
CDY56022	Canola	nucleus	19.81	20.45
CDX99105	Canola	cytosol, plastid	20.43	20.37
CDY56080	Canola	cytosol	17.65	20.07
CDX92770	Canola	nucleus	20.12	20.06
CDX81263	Canola	cytosol, peroxisome, plastid	17.96	20.0
CDY42740	Canola	nucleus	19.81	19.88
CDY18690	Canola	cytosol, peroxisome, plastid	17.96	19.4
CDY08249	Canola	cytosol	19.81	19.1
CDY56081	Canola	nucleus	13.62	18.41
CDX89343	Canola	cytosol, mitochondrion	19.2	17.61
CDX94342	Canola	mitochondrion, nucleus	20.43	17.05
CDY28208	Canola	cytosol	12.07	16.81
CDY01221	Canola	cytosol	9.91	14.68
CDX69496	Canola	cytosol	13.0	14.58
CDX90972	Canola	cytosol	14.86	14.33
CDX78323	Canola	cytosol	12.07	13.54
CDY69134	Canola	cytosol	12.07	13.4
CDY58938	Canola	nucleus	18.27	13.38
CDY03622	Canola	nucleus	18.27	13.23
CDX85531	Canola	cytosol	13.93	13.12
CDY26465	Canola	cytosol	13.62	12.98
CDY02194	Canola	peroxisome	15.48	12.56
CDY51628	Canola	peroxisome	15.79	12.56
CDX69973	Canola	cytosol	13.62	12.22
CDY21513	Canola	cytosol	13.31	12.08
CDY34722	Canola	cytosol	13.93	11.54
CDY34721	Canola	cytosol	13.93	11.54
CDY11934	Canola	nucleus	21.36	10.58
CDY23599	Canola	golgi, mitochondrion	19.81	10.51

Protein Annotations

EnsemblPlants:CDY01669	EnsemblPlantsGene:GSBRNA2T00112741001	Gene3D:3.30.40.10	GO:A0A078ELP4	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	ProteinID:CDY01669	ProteinID:CDY01669.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EBB056
MapMan:35.1	:	:	:	:	:

Description

BnaC04g30830D

Coordinates

chrLK031928:-:264037..265192

Molecular Weight (calculated)

36981.1 Da

IEP (calculated)

8.372

GRAVY (calculated)

-0.689

Length

323 amino acids

Sequence
(BLAST)

001: MSLSVPIRRT DGAPNGAFRT FGLYWCYHCH RTVRIASSNP SEIACPRCLR QFVVEIEMRR PRVTFTHAAP PFDASPETRL LEALSLMFDP PTIGRFGEDP
101: FLRARSRNVE HEPTTPLPHH RRRHSLDNGN NGSLPPPRRT YVILRPTDPI PPRRMNPHDF FTGGSGLEQL IEQLTQDDRP GPPPASEPTI DALPTVTITS
201: KHLTNDMSQC TVCMEDFVAG GEATELPCKH IYHKNCITPW LRLHNSCPIC RRDLPPVNTT VTDSQERGDP IREDVPERRR PRWMQFWNMG LSRARYQRVS
301: PEPEEAGQRN TRVPLQWPHC NIL

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.