Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 93.39 | 92.28 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 87.69 | 89.57 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 84.08 | 88.05 |
| Zm00001d018190_P001 | Maize | mitochondrion | 67.27 | 67.27 |
| Os02t0767600-00 | Rice | mitochondrion | 65.17 | 66.16 |
| Zm00001d052154_P001 | Maize | mitochondrion | 62.46 | 65.41 |
| KXG31176 | Sorghum | plastid | 63.36 | 59.27 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 39.34 | 53.25 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 49.85 | 52.37 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 34.53 | 34.53 |
| CDX74533 | Canola | cytosol | 29.73 | 33.9 |
| Solyc11g012950.1.1 | Tomato | cytosol | 33.03 | 33.03 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 25.83 | 32.95 |
| PGSC0003DMT400002370 | Potato | cytosol | 31.53 | 32.51 |
| AT1G60360.1 | Thale cress | nucleus | 30.33 | 30.89 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.03 | 30.77 |
| CDY01669 | Canola | plastid | 29.43 | 30.34 |
| KRH64713 | Soybean | nucleus | 31.83 | 30.11 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 23.12 | 26.64 |
| PGSC0003DMT400061055 | Potato | extracellular | 23.72 | 26.51 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 23.42 | 26.0 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 17.12 | 25.79 |
| KRH10441 | Soybean | mitochondrion | 24.32 | 25.23 |
| KRH44018 | Soybean | mitochondrion | 23.72 | 24.92 |
| HORVU1Hr1G043220.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 25.23 | 22.89 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 24.02 | 22.41 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 26.13 | 21.7 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 22.22 | 21.02 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 27.33 | 20.18 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 22.82 | 19.39 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 21.92 | 18.86 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 21.32 | 18.83 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 17.42 | 16.81 |
| HORVU1Hr1G068950.2 | Barley | golgi | 18.92 | 16.32 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 18.32 | 15.33 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 15.32 | 14.01 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 15.32 | 13.78 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 15.62 | 13.58 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G080320.2 | EnsemblPlantsGene:HORVU6Hr1G080320 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B47269C | UniProt:A0A287UVI0 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr6H:+:541486305..541487306
Molecular Weight (calculated)
36474.3 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.523
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPVYGGGGG VVRQRTCRMY WCYECARALR IISYPATDVF CPRCYGRFLH EIDPPPRPAL PPPGFFPHHF APHPTHYHDG NPRRWVVYGA GPSVPGRALR
101: QLPPPVREPT RVHAPAPAPP PRRRVPSPPP APVATPPAID PGDYFTGGDL NRLVEELTQN DRPGPAPAPT SAIDSLPTVR IAAQHLSDDG GGSQCPVCKE
201: EFELGEAARQ LPCKHVYHSD CIVPWLRLHN SCPVCRFKLP GGAAPSTRRA SGSNGGGGAR NRDREREPAT MVRWGPLSWM VPARGTEDPD DGWEYGRRRH
301: GRPEDGDAGG NDMSALQSFV LVATCVFFFS FFA
101: QLPPPVREPT RVHAPAPAPP PRRRVPSPPP APVATPPAID PGDYFTGGDL NRLVEELTQN DRPGPAPAPT SAIDSLPTVR IAAQHLSDDG GGSQCPVCKE
201: EFELGEAARQ LPCKHVYHSD CIVPWLRLHN SCPVCRFKLP GGAAPSTRRA SGSNGGGGAR NRDREREPAT MVRWGPLSWM VPARGTEDPD DGWEYGRRRH
301: GRPEDGDAGG NDMSALQSFV LVATCVFFFS FFA
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.