Factsheet for Solyc01g104260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061055	Potato	extracellular	92.67	93.29
KRH10441	Soybean	mitochondrion	43.0	40.19
KRH44018	Soybean	mitochondrion	42.0	39.75
GSMUA_Achr7P13060_001	Banana	mitochondrion	26.0	31.71
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.0	29.89
Solyc01g009000.2.1	Tomato	plastid	27.33	25.79
TraesCS6D01G309800.1	Wheat	mitochondrion	26.33	24.84
TraesCS7D01G170800.1	Wheat	mitochondrion	26.0	24.38
TraesCS6A01G330700.1	Wheat	mitochondrion	26.33	24.23
TraesCS7B01G074800.1	Wheat	mitochondrion	26.0	24.22
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	25.67	24.14
Os02t0767600-00	Rice	mitochondrion	26.33	24.09
Zm00001d052154_P001	Maize	mitochondrion	25.33	23.9
HORVU0Hr1G019650.1	Barley	mitochondrion	25.0	23.66
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.67	23.53
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	26.0	23.42
Zm00001d018190_P001	Maize	mitochondrion	25.33	22.82
EER89401	Sorghum	mitochondrion, nucleus	25.33	22.75
TraesCS6B01G361600.1	Wheat	mitochondrion	25.33	22.55
KXG31176	Sorghum	plastid	26.33	22.19
Solyc04g009170.1.1	Tomato	nucleus	22.67	22.01
Solyc11g012950.1.1	Tomato	cytosol	23.67	21.32
Solyc08g075910.1.1	Tomato	nucleus	21.33	21.26
Solyc03g098590.2.1	Tomato	cytosol	24.0	19.51
VIT_12s0034g01390.t01	Wine grape	mitochondrion	29.0	19.29
Solyc06g005650.2.1	Tomato	extracellular	12.33	18.5
Solyc04g011610.1.1	Tomato	nucleus	23.67	17.97
Solyc01g050040.2.1	Tomato	nucleus	15.33	15.75
Solyc09g074460.1.1	Tomato	nucleus	19.33	15.38
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	16.67	12.59
Solyc02g089410.2.1	Tomato	nucleus	13.33	12.23
Solyc03g114680.2.1	Tomato	nucleus	17.33	10.44

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4B201
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	SMART:SM00184	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc01g104260.2	EnsemblPlants:Solyc01g104260.2.1	UniParc:UPI00027687F0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr1:-:92697094..92698205

Molecular Weight (calculated)

34929.3 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.495

Length

300 amino acids

Sequence
(BLAST)

001: MPTIPRARVI VNGVQRMRTY HYYWCRHCQR SIRTTSANPF EILCPHCYSQ VFYELDVTRP RLVLSNVTRL QPQPSSNSRL LDALALMVDP PIRQLNSDIG
101: DENHRRSTRQ RARVILQFIG PDDQPVRPVS PDENAFSFPS LQELIDHDRP GPPPTPSSAI DALPRIVLTP NLLENDSVCP VCKDEFEVGI QVIELPCKHF
201: YHSECIVPWL RLHNTCPVCR YQLQGFSNNE DQTGTNYEFN EQQEEEENIQ NPLIWGWTQL TSLWPFSLIS SLRERYFNTF ETTTSAFPRG RAWWNPWIFS

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.