Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 92.64 | 94.97 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 91.41 | 88.43 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 89.57 | 87.69 |
| Zm00001d052154_P001 | Maize | mitochondrion | 65.64 | 67.3 |
| Os02t0767600-00 | Rice | mitochondrion | 65.64 | 65.24 |
| Zm00001d018190_P001 | Maize | mitochondrion | 65.03 | 63.66 |
| KXG31176 | Sorghum | plastid | 67.48 | 61.8 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 42.64 | 56.5 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 46.63 | 47.65 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 34.66 | 33.93 |
| CDX74533 | Canola | cytosol | 30.06 | 33.56 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 26.38 | 32.95 |
| Solyc11g012950.1.1 | Tomato | cytosol | 33.44 | 32.73 |
| PGSC0003DMT400002370 | Potato | cytosol | 32.21 | 32.51 |
| AT1G60360.1 | Thale cress | nucleus | 30.98 | 30.89 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.67 | 30.77 |
| CDY01669 | Canola | plastid | 30.37 | 30.65 |
| KRH64713 | Soybean | nucleus | 32.82 | 30.4 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 24.85 | 28.03 |
| PGSC0003DMT400061055 | Potato | extracellular | 24.54 | 26.85 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 22.7 | 26.43 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 24.23 | 26.33 |
| KRH44018 | Soybean | mitochondrion | 24.54 | 25.24 |
| KRH10441 | Soybean | mitochondrion | 24.85 | 25.23 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 24.23 | 23.58 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 25.15 | 22.16 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 26.99 | 22.06 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 17.79 | 21.56 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 27.91 | 20.18 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 21.78 | 18.93 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 22.09 | 17.87 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 17.18 | 17.28 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 16.26 | 17.26 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.26 | 16.01 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 19.02 | 15.35 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 18.4 | 11.76 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G330700.1 | EnsemblPlantsGene:TraesCS6A01G330700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:-:563130408..563132845
Molecular Weight (calculated)
36229.9 Da
IEP (calculated)
8.861
GRAVY (calculated)
-0.702
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPVYGGGGG GQARQRTCRM YWCYECARAL RIISYPATDV FCPRCYGRFL HEIDPPPRPA LPPPGYFPHH FAPHPYPHPH YHDGNPRRWV VYGAAPTVPG
101: RPFRQLPPPV REPTRVHAPA PTPPPRRRMP SPPPAPVARR PATPPAIDPG DYFTGGDLNR LVEELTQNDR PGPAPAPTSA IDSLPTVRIA AQHLSDDGGS
201: QCPVCKEEFE LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRFKLPGTG AASSTRRPSG SNGARNRDRE REPATTVRWG PLSWMVPARG TEDADDGWEY
301: GRRGHGRPED GDAGAFYAWW RSLFLL
101: RPFRQLPPPV REPTRVHAPA PTPPPRRRMP SPPPAPVARR PATPPAIDPG DYFTGGDLNR LVEELTQNDR PGPAPAPTSA IDSLPTVRIA AQHLSDDGGS
201: QCPVCKEEFE LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRFKLPGTG AASSTRRPSG SNGARNRDRE REPATTVRWG PLSWMVPARG TEDADDGWEY
301: GRRGHGRPED GDAGAFYAWW RSLFLL
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.