Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74533 | Canola | cytosol | 70.03 | 78.42 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 76.45 | 76.92 |
| CDY01669 | Canola | plastid | 74.31 | 75.23 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 46.48 | 45.65 |
| PGSC0003DMT400002370 | Potato | cytosol | 40.98 | 41.49 |
| Solyc11g012950.1.1 | Tomato | cytosol | 40.67 | 39.94 |
| KRH64713 | Soybean | nucleus | 41.59 | 38.64 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 29.05 | 38.62 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 30.89 | 31.76 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 30.89 | 31.66 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 30.89 | 31.56 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 30.58 | 31.55 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 30.89 | 31.37 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 30.89 | 30.98 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 31.8 | 30.59 |
| EER89401 | Sorghum | mitochondrion, nucleus | 31.19 | 30.54 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 30.89 | 30.33 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 30.89 | 29.97 |
| Os02t0767600-00 | Rice | mitochondrion | 29.97 | 29.88 |
| Zm00001d052154_P001 | Maize | mitochondrion | 28.75 | 29.56 |
| Zm00001d018190_P001 | Maize | mitochondrion | 29.97 | 29.43 |
| KXG31176 | Sorghum | plastid | 29.36 | 26.97 |
| AT2G40830.4 | Thale cress | mitochondrion | 25.08 | 25.0 |
| AT3G56580.1 | Thale cress | mitochondrion | 24.46 | 25.0 |
| AT4G26400.1 | Thale cress | nucleus | 22.32 | 20.51 |
| AT2G39720.2 | Thale cress | nucleus | 25.08 | 20.45 |
| AT3G13430.2 | Thale cress | nucleus | 19.57 | 20.32 |
| AT3G19950.2 | Thale cress | cytosol | 23.55 | 19.95 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 23.85 | 19.75 |
| AT5G64920.1 | Thale cress | cytosol | 18.96 | 18.56 |
| AT1G55530.2 | Thale cress | nucleus | 19.27 | 17.95 |
| AT5G56340.1 | Thale cress | nucleus | 21.71 | 17.93 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 24.16 | 15.43 |
| AT5G01980.1 | Thale cress | nucleus | 20.18 | 13.39 |
| AT5G60820.1 | Thale cress | cytosol | 16.51 | 12.89 |
| AT5G15820.1 | Thale cress | cytosol | 13.46 | 12.64 |
| AT5G08139.1 | Thale cress | cytosol | 14.07 | 12.23 |
| AT3G02340.2 | Thale cress | cytosol | 13.46 | 10.76 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:842331 | ProteinID:AAC24072.1 | ProteinID:AEE33678.1 | ArrayExpress:AT1G60360 |
| EnsemblPlantsGene:AT1G60360 | RefSeq:AT1G60360 | TAIR:AT1G60360 | RefSeq:AT1G60360-TAIR-G | EnsemblPlants:AT1G60360.1 | TAIR:AT1G60360.1 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_176239.1 | UniProt:O80757 | PFAM:PF13639 |
| PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF4 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00000AA50E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
Coordinates
chr1:-:22242531..22243760
Molecular Weight (calculated)
37425.5 Da
IEP (calculated)
9.037
GRAVY (calculated)
-0.707
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.