Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 85.98 | 88.96 |
| CDY35437 | Canola | mitochondrion, nucleus | 85.98 | 88.96 |
| Bra004589.1-P | Field mustard | nucleus | 64.33 | 86.48 |
| CDY22483 | Canola | mitochondrion | 79.57 | 86.14 |
| CDY23878 | Canola | mitochondrion, nucleus | 78.05 | 83.93 |
| CDX79968 | Canola | mitochondrion, nucleus | 75.91 | 83.84 |
| AT3G56580.1 | Thale cress | mitochondrion | 65.85 | 67.5 |
| KRH71659 | Soybean | nucleus | 56.1 | 59.55 |
| KRH33121 | Soybean | nucleus | 55.18 | 58.58 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 54.57 | 57.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.94 | 50.78 |
| Os03t0351800-01 | Rice | nucleus | 42.38 | 49.12 |
| KRH14643 | Soybean | nucleus | 50.3 | 49.11 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 50.3 | 49.11 |
| EER92269 | Sorghum | nucleus | 42.38 | 48.77 |
| PGSC0003DMT400058464 | Potato | nucleus | 46.95 | 48.43 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 42.07 | 47.75 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 42.07 | 47.75 |
| Zm00001d047476_P001 | Maize | mitochondrion | 42.38 | 47.6 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 41.77 | 47.57 |
| Solyc01g009000.2.1 | Tomato | plastid | 46.04 | 47.48 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 41.77 | 47.4 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 33.23 | 47.19 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 36.59 | 46.33 |
| KRH18631 | Soybean | nucleus | 42.38 | 45.42 |
| PGSC0003DMT400079301 | Potato | nucleus | 39.94 | 43.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 39.63 | 43.19 |
| KRH73496 | Soybean | mitochondrion | 47.87 | 42.32 |
| GSMUA_Achr11P... | Banana | mitochondrion | 36.59 | 40.13 |
| KRH18634 | Soybean | nucleus | 26.83 | 37.29 |
| AT3G13430.2 | Thale cress | nucleus | 24.09 | 25.08 |
| AT1G60360.1 | Thale cress | nucleus | 25.0 | 25.08 |
| AT4G26400.1 | Thale cress | nucleus | 26.83 | 24.72 |
| AT3G19950.2 | Thale cress | cytosol | 28.35 | 24.09 |
| AT5G56340.1 | Thale cress | nucleus | 28.35 | 23.48 |
| AT1G55530.2 | Thale cress | nucleus | 25.0 | 23.36 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 26.52 | 22.03 |
| AT5G64920.1 | Thale cress | cytosol | 21.95 | 21.56 |
| AT2G39720.2 | Thale cress | nucleus | 26.22 | 21.45 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 26.22 | 16.8 |
| AT5G01980.1 | Thale cress | nucleus | 23.17 | 15.42 |
| AT5G08139.1 | Thale cress | cytosol | 17.07 | 14.89 |
| AT5G60820.1 | Thale cress | cytosol | 18.29 | 14.32 |
| AT5G15820.1 | Thale cress | cytosol | 13.41 | 12.64 |
| AT3G02340.2 | Thale cress | cytosol | 14.02 | 11.25 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818680 | ProteinID:AAB86443.1 | ProteinID:AEC09886.1 | ProteinID:AEC09887.1 |
| ProteinID:AEC09888.1 | EMBL:AF079180 | ProteinID:ANM62005.1 | ArrayExpress:AT2G40830 | EnsemblPlantsGene:AT2G40830 | RefSeq:AT2G40830 |
| TAIR:AT2G40830 | RefSeq:AT2G40830-TAIR-G | EnsemblPlants:AT2G40830.4 | EMBL:AY139987 | Unigene:At.20405 | EMBL:BT008726 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0030312 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001324188.1 | RefSeq:NP_565942.1 | RefSeq:NP_973651.1 |
| RefSeq:NP_973652.1 | UniProt:O22197 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 |
| PANTHER:PTHR44290:SF1 | Symbol:RHC1A | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A1ED5 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
Coordinates
chr2:+:17042623..17044915
Molecular Weight (calculated)
36579.1 Da
IEP (calculated)
7.521
GRAVY (calculated)
-0.796
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.