Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92269 | Sorghum | nucleus | 92.47 | 94.74 |
| Os03t0351800-01 | Rice | nucleus | 88.7 | 91.52 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 83.22 | 84.08 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 83.22 | 84.08 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 83.22 | 84.08 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 82.53 | 83.68 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 51.03 | 64.5 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 56.16 | 52.23 |
| KRH71659 | Soybean | nucleus | 52.4 | 49.51 |
| GSMUA_Achr11P... | Banana | mitochondrion | 50.68 | 49.5 |
| KRH33121 | Soybean | nucleus | 52.05 | 49.19 |
| PGSC0003DMT400058464 | Potato | nucleus | 52.74 | 48.43 |
| Solyc01g009000.2.1 | Tomato | plastid | 51.71 | 47.48 |
| KRH14643 | Soybean | nucleus | 54.45 | 47.32 |
| KRH18631 | Soybean | nucleus | 48.97 | 46.73 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 51.71 | 44.94 |
| Bra004589.1-P | Field mustard | nucleus | 36.99 | 44.26 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 46.23 | 43.55 |
| CDY27204 | Canola | mitochondrion, nucleus | 45.89 | 42.95 |
| AT3G56580.1 | Thale cress | mitochondrion | 46.92 | 42.81 |
| CDX72127 | Canola | mitochondrion | 46.23 | 42.72 |
| AT2G40830.4 | Thale cress | mitochondrion | 47.6 | 42.38 |
| CDY35437 | Canola | mitochondrion, nucleus | 45.89 | 42.27 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 45.89 | 42.27 |
| Bra014684.1-P | Field mustard | nucleus | 27.74 | 42.19 |
| CDX75998 | Canola | nucleus | 27.74 | 42.19 |
| KRH73496 | Soybean | mitochondrion | 53.42 | 42.05 |
| CDY23878 | Canola | mitochondrion, nucleus | 43.84 | 41.97 |
| CDX79968 | Canola | mitochondrion, nucleus | 42.47 | 41.75 |
| CDY22483 | Canola | mitochondrion | 41.78 | 40.26 |
| KRH18634 | Soybean | nucleus | 31.85 | 39.41 |
| Zm00001d043183_P001 | Maize | plastid | 43.49 | 39.08 |
| PGSC0003DMT400079301 | Potato | nucleus | 40.07 | 39.0 |
| Solyc08g075910.1.1 | Tomato | nucleus | 39.73 | 38.54 |
| CDX94901 | Canola | cytosol | 38.7 | 35.99 |
| Zm00001d012564_P001 | Maize | mitochondrion | 42.12 | 35.55 |
| Zm00001d047824_P001 | Maize | plastid | 25.0 | 26.26 |
| Zm00001d028590_P001 | Maize | plastid | 25.0 | 26.26 |
| Zm00001d052154_P001 | Maize | mitochondrion | 28.08 | 25.79 |
| Zm00001d018190_P001 | Maize | mitochondrion | 28.77 | 25.23 |
| Zm00001d045625_P001 | Maize | cytosol | 26.71 | 25.16 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 32.88 | 24.94 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 28.77 | 24.71 |
| Zm00001d047560_P001 | Maize | cytosol | 26.03 | 24.6 |
| Zm00001d032646_P001 | Maize | cytosol | 31.51 | 24.53 |
| Zm00001d040445_P001 | Maize | nucleus | 28.42 | 23.99 |
| Zm00001d038528_P001 | Maize | cytosol | 26.71 | 23.42 |
| Zm00001d008237_P001 | Maize | nucleus | 27.74 | 23.21 |
| Zm00001d010635_P001 | Maize | nucleus | 23.97 | 22.44 |
| Zm00001d035677_P001 | Maize | plastid | 26.71 | 22.41 |
| Zm00001d013005_P002 | Maize | nucleus | 26.37 | 20.75 |
| Zm00001d011076_P001 | Maize | plastid | 26.71 | 20.16 |
| Zm00001d046663_P001 | Maize | cytosol | 18.15 | 17.79 |
| Zm00001d051736_P001 | Maize | cytosol | 19.52 | 17.27 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.78 | 16.95 |
| Zm00001d053704_P001 | Maize | cytosol | 17.81 | 14.61 |
Protein Annotations
| EntrezGene:100283413 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:AQL06650.1 | UniProt:B6TI63 | EMBL:BT068134 |
| EMBL:BT084193 | EMBL:EU964678 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000182D486 | EnsemblPlantsGene:Zm00001d047476 | EnsemblPlants:Zm00001d047476_P001 | EnsemblPlants:Zm00001d047476_T001 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Probable E3 ubiquitin-protein ligase RHC1A
Coordinates
chr9:+:131424109..131424987
Molecular Weight (calculated)
32490.1 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.662
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGRQAYWC YQCRQRVRPR GREMVCPYCD SGFVAEMDDV DALMSHFVGT DPDFHRDPRF GIMEAISAVM RHGMAGMNRE VDVRGRPNFF SDLEMEFGSG
101: PWLLFRGQLP GHLTEDNGFD VFVNGRRGGG GGGGGMRRAN IADYFVGPGL DDLIEQLTQN DRRGPPPAAQ SSIDAMPTVK ITQRHLSGDS HCPICKEKFE
201: MGSEEAREMP CKHLYHSDCI VPWLEQHNSC PVCRYELPPQ GSATGASCSR ARSTDQSQSS SSSSSSGRTS GRQRRRNPFS FLWPFRSSSS SR
101: PWLLFRGQLP GHLTEDNGFD VFVNGRRGGG GGGGGMRRAN IADYFVGPGL DDLIEQLTQN DRRGPPPAAQ SSIDAMPTVK ITQRHLSGDS HCPICKEKFE
201: MGSEEAREMP CKHLYHSDCI VPWLEQHNSC PVCRYELPPQ GSATGASCSR ARSTDQSQSS SSSSSSGRTS GRQRRRNPFS FLWPFRSSSS SR
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.