Factsheet for Bra004589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79968	Canola	mitochondrion, nucleus	91.39	75.08
CDY23878	Canola	mitochondrion, nucleus	89.34	71.48
Bra000207.1-P	Field mustard	mitochondrion, nucleus	85.25	65.62
AT2G40830.4	Thale cress	mitochondrion	86.48	64.33
Bra014684.1-P	Field mustard	nucleus	47.95	60.94
Bra007253.1-P	Field mustard	mitochondrion, nucleus	64.75	50.97
KRH33121	Soybean	nucleus	55.74	44.01
KRH71659	Soybean	nucleus	55.33	43.69
VIT_08s0040g00590.t01	Wine grape	nucleus	52.87	41.08
VIT_06s0009g02350.t01	Wine grape	mitochondrion	53.69	38.99
Os03t0351800-01	Rice	nucleus	45.08	38.87
EER92269	Sorghum	nucleus	44.67	38.25
GSMUA_Achr8P09890_001	Banana	nucleus	36.07	38.1
GSMUA_AchrUn_...	Banana	nucleus	40.16	37.98
Zm00001d047476_P001	Maize	mitochondrion	44.26	36.99
KRH14643	Soybean	nucleus	50.41	36.61
TraesCS3D01G432800.1	Wheat	mitochondrion	43.03	36.33
HORVU3Hr1G096110.1	Barley	mitochondrion	43.03	36.33
TraesCS3A01G440000.1	Wheat	mitochondrion	43.03	36.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	38.52	36.29
TraesCS3B01G474100.1	Wheat	mitochondrion	42.62	36.11
Solyc01g009000.2.1	Tomato	plastid	46.72	35.85
PGSC0003DMT400058464	Potato	nucleus	45.9	35.22
KRH18631	Soybean	nucleus	43.44	34.64
PGSC0003DMT400079301	Potato	nucleus	42.21	34.33
Solyc08g075910.1.1	Tomato	nucleus	41.8	33.89
Bra001767.1-P	Field mustard	nucleus	29.1	33.18
KRH73496	Soybean	mitochondrion	46.72	30.73
GSMUA_Achr11P...	Banana	mitochondrion	36.48	29.77
KRH18634	Soybean	nucleus	27.87	28.81
Bra038246.1-P	Field mustard	nucleus	30.33	22.77
Bra035835.1-P	Field mustard	nucleus	28.28	21.1
Bra002823.1-P	Field mustard	nucleus	29.92	20.74
Bra037109.1-P	Field mustard	nucleus	27.05	19.76
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.23	19.69
Bra019109.1-P	Field mustard	nucleus	25.82	19.57
Bra011215.1-P	Field mustard	cytosol	18.44	19.4
Bra037999.1-P	Field mustard	nucleus	22.54	18.97
Bra030854.1-P	Field mustard	nucleus	23.77	18.59
Bra026444.1-P	Field mustard	nucleus	27.87	18.33
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.87	18.23
Bra030136.1-P	Field mustard	cytosol	17.21	17.36
Bra000143.1-P	Field mustard	nucleus	26.64	17.33
Bra005020.1-P	Field mustard	nucleus, plastid	24.18	17.3
Bra027436.1-P	Field mustard	nucleus	21.72	17.15
Bra020313.1-P	Field mustard	plastid	27.05	16.97
Bra002559.1-P	Field mustard	plastid	27.46	16.88
Bra006709.1-P	Field mustard	plastid	25.82	16.03
Bra005970.1-P	Field mustard	cytosol	18.44	15.52
Bra037800.1-P	Field mustard	cytosol	18.85	15.23
Bra014266.1-P	Field mustard	nucleus	26.23	14.51
Bra009323.1-P	Field mustard	cytosol	22.13	14.25
Bra028935.1-P	Field mustard	nucleus	29.92	12.85
Bra008671.1-P	Field mustard	nucleus	14.34	12.2
Bra021467.1-P	Field mustard	nucleus	18.85	11.79
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	18.03	11.08
Bra013006.1-P	Field mustard	nucleus	18.85	11.03

Protein Annotations

EnsemblPlants:Bra004589.1	EnsemblPlants:Bra004589.1-P	EnsemblPlantsGene:Bra004589	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF1	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547592	UniProt:M4CK55	MapMan:35.1

Description

AT2G40830 (E=1e-080) RHC1A | RHC1A; protein binding / zinc ion binding

Coordinates

chrA05:+:923675..924409

Molecular Weight (calculated)

27151.2 Da

IEP (calculated)

8.147

GRAVY (calculated)

-0.905

Length

244 amino acids

Sequence
(BLAST)

001: MRNRLADREL RGRSIPSRPE SFPGLAPLLI FGGQVPYRDN AVEALFSNGS PGIGITLGNT GDYFFGPGLE ELFEQLSTGV STRRGPPPAP RSSIDALPTV
101: KIAQRHLRSS DSNCPVCKEE FELGAEAKQM PCNHVYHSDC IVPWLVQHNS CPVCRQELPS ARGSSTNENR TTTRNNRSSS NSNERRNPFS SLWPFRSSGS
201: SSNNNTQNRG GARNSETTDE NHNYHHQQQQ QQSHMGYSGW PFDY

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.