Factsheet for Bra001767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82271	Canola	cytosol	95.79	96.24
Bra038246.1-P	Field mustard	nucleus	83.18	54.77
Bra035835.1-P	Field mustard	nucleus	78.04	51.07
AT3G19950.2	Thale cress	cytosol	80.84	44.82
KRH36132	Soybean	nucleus	47.66	35.66
PGSC0003DMT400082489	Potato	nucleus	52.8	35.09
KRG90622	Soybean	nucleus	48.6	34.9
Solyc04g009170.1.1	Tomato	nucleus	50.0	34.63
Zm00001d045625_P001	Maize	cytosol	49.53	34.19
EER89027	Sorghum	nucleus	50.0	33.33
Os06t0101300-01	Rice	nucleus	49.53	31.36
TraesCS7D01G000400.1	Wheat	cytosol	48.13	31.21
VIT_17s0053g00320.t01	Wine grape	plastid	53.27	30.89
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	47.66	30.45
Bra004589.1-P	Field mustard	nucleus	33.18	29.1
Bra014684.1-P	Field mustard	nucleus	25.23	28.12
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	46.26	27.73
Bra000207.1-P	Field mustard	mitochondrion, nucleus	34.58	23.34
Bra027436.1-P	Field mustard	nucleus	33.64	23.3
Bra007253.1-P	Field mustard	mitochondrion, nucleus	33.18	22.9
Bra037109.1-P	Field mustard	nucleus	35.05	22.46
Bra030854.1-P	Field mustard	nucleus	32.71	22.44
Bra011215.1-P	Field mustard	cytosol	24.3	22.41
Bra002823.1-P	Field mustard	nucleus	35.98	21.88
Bra037999.1-P	Field mustard	nucleus	29.44	21.72
Bra019109.1-P	Field mustard	nucleus	31.31	20.81
Bra030136.1-P	Field mustard	cytosol	22.43	19.83
Bra026444.1-P	Field mustard	nucleus	33.64	19.41
Bra006709.1-P	Field mustard	plastid	35.51	19.34
Bra002559.1-P	Field mustard	plastid	34.58	18.64
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	31.78	18.23
Bra037800.1-P	Field mustard	cytosol	25.7	18.21
Bra020313.1-P	Field mustard	plastid	32.71	17.99
Bra005020.1-P	Field mustard	nucleus, plastid	28.5	17.89
Bra000143.1-P	Field mustard	nucleus	31.31	17.87
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.64	17.54
Bra005970.1-P	Field mustard	cytosol	22.43	16.55
Bra014266.1-P	Field mustard	nucleus	29.91	14.51
Bra028935.1-P	Field mustard	nucleus	37.38	14.08
Bra008671.1-P	Field mustard	nucleus	18.22	13.59
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	23.83	12.85
Bra021467.1-P	Field mustard	nucleus	22.9	12.56
Bra009323.1-P	Field mustard	cytosol	21.5	12.14
Bra013006.1-P	Field mustard	nucleus	22.43	11.51

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra001767	EnsemblPlants:Bra001767.1	EnsemblPlants:Bra001767.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083
UniProt:M4CC37	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF1	SMART:SM00184
SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0002540561	InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G19950 (E=2e-088) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:18330965..18331609

Molecular Weight (calculated)

23321.9 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.763

Length

214 amino acids

Sequence
(BLAST)

001: MQPRSTRNDA FDPVSFLQNH LQHLRSSGTH VQFVIENHPS DQSNRVPGNL GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAVDGLPSV KVTKDMVRSE
101: MNQCAVCMDE FEDGGDVKQM PCKHVFHQDC LMPWLELHNS CPVCRYELPT DDPEYESRGQ ASGGGQGDVE TGRRFSIQVP LPFRGRDGDG DGSGSGAPGS
201: GGGANLETRG DDLD

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.