Factsheet for Bra028935.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002823.1-P	Field mustard	nucleus	49.82	80.4
AT5G56340.1	Thale cress	nucleus	54.4	78.03
CDY11934	Canola	nucleus	87.68	76.38
Bra019109.1-P	Field mustard	nucleus	36.8	64.91
Bra026444.1-P	Field mustard	nucleus	39.79	60.92
KRG97316	Soybean	nucleus	34.33	56.69
VIT_06s0004g00120.t01	Wine grape	nucleus	33.98	52.45
Bra027436.1-P	Field mustard	nucleus	28.17	51.78
PGSC0003DMT400046527	Potato	nucleus	32.57	51.39
GSMUA_Achr11P...	Banana	nucleus	23.77	50.0
Bra037109.1-P	Field mustard	nucleus	28.17	47.9
Bra030854.1-P	Field mustard	nucleus	26.06	47.44
Os03t0812200-01	Rice	nucleus	27.29	42.01
Bra037999.1-P	Field mustard	nucleus	21.13	41.38
Zm00001d010635_P001	Maize	nucleus	22.71	41.35
Os05t0488800-01	Rice	nucleus	23.06	40.56
Solyc01g050040.2.1	Tomato	nucleus	20.6	40.07
Bra011215.1-P	Field mustard	cytosol	16.2	39.66
TraesCS1B01G316300.1	Wheat	nucleus	22.89	39.16
TraesCS1D01G305300.1	Wheat	nucleus	22.71	38.86
Zm00001d013005_P002	Maize	nucleus	24.82	38.01
Bra001767.1-P	Field mustard	nucleus	14.08	37.38
Zm00001d038528_P001	Maize	cytosol	21.83	37.24
KXG37275	Sorghum	nucleus	25.0	37.08
TraesCS5B01G480100.1	Wheat	nucleus	26.06	36.82
KXG22238	Sorghum	plastid	25.18	36.76
TraesCS5D01G480800.1	Wheat	nucleus	26.06	36.63
HORVU1Hr1G068950.2	Barley	golgi	24.65	36.27
HORVU5Hr1G111530.1	Barley	nucleus	25.35	36.18
TraesCS5A01G467700.1	Wheat	nucleus	25.7	36.14
Bra014684.1-P	Field mustard	nucleus	10.56	31.25
Bra004589.1-P	Field mustard	nucleus	12.85	29.92
Bra035835.1-P	Field mustard	nucleus	16.73	29.05
Bra030136.1-P	Field mustard	cytosol	12.32	28.93
Bra038246.1-P	Field mustard	nucleus	16.37	28.62
Bra007253.1-P	Field mustard	mitochondrion, nucleus	15.32	28.06
Bra000207.1-P	Field mustard	mitochondrion, nucleus	15.32	27.44
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	15.85	24.13
Bra037800.1-P	Field mustard	cytosol	12.68	23.84
Bra002559.1-P	Field mustard	plastid	15.49	22.17
Bra006709.1-P	Field mustard	plastid	15.32	22.14
Bra020313.1-P	Field mustard	plastid	14.96	21.85
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.5	21.85
Bra005020.1-P	Field mustard	nucleus, plastid	12.85	21.41
Bra000143.1-P	Field mustard	nucleus	13.91	21.07
Bra005970.1-P	Field mustard	cytosol	9.15	17.93
Bra014266.1-P	Field mustard	nucleus	12.68	16.33
Bra009323.1-P	Field mustard	cytosol	9.86	14.78
Bra008671.1-P	Field mustard	nucleus	7.39	14.63
Bra021467.1-P	Field mustard	nucleus	9.68	14.1
Bra013006.1-P	Field mustard	nucleus	9.68	13.19
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	8.63	12.34

Protein Annotations

EnsemblPlants:Bra028935.1	EnsemblPlants:Bra028935.1-P	EnsemblPlantsGene:Bra028935	Gene3D:3.30.40.10	InterPro:FBD	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF08387
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF57850	UniParc:UPI000253FD98	UniProt:M4EJG9	MapMan:35.1	:

Description

AT5G56340 (E=4e-127) ATCRT1 | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:5478231..5485806

Molecular Weight (calculated)

64674.1 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.634

Length

568 amino acids

Sequence
(BLAST)

001: MQLMQSWYMQ DVYPAGSVFT SLVHFKICTC ETEWVNLLMR VLRDSPNLRS LKLQQDMYPA GSVFSSLVHL KICTCETEWV NVLMCVLKDS PSLRALKLHQ
101: CHFLRSKEPR PCWNPAWNEP SSVPECLLSS IETFEWVKYE GAEEEKEVVA FVFRSAKCLK KATINFHSKT NDTDKKLEPF ARPTRRRRRD MEETMAARYW
201: CHMCSQMVNP TIESEIKCPF CQSGFVEEMN GNGNGNGGLR DVQDPETEFG TTDRAMTLWA PILLGMMSSP RRRRRFRRAE FVEEEEDNED ESNNVDHHHH
301: RARRHGGEID LDREFESLLR RRRRSSGNIL QLLQGIRAGI ASEYESSDNN ERVIMINPYN QSLVVRDQTQ THSALTSLGD YFIGPGLDLL LQHLAENDPN
401: RQGTPPARKE AVEALPTVKV TEPLLQCSVC LDEFERGVEA KEMPCKHKFH VKCIVPWLEI HSSCPVCRFE LPSGNDDGDD ESKVVSERGT RTVPESSNRE
501: EVVEDVGSVE RGREEDVRSG NGRRFSIPWP FSGFFSSSSS SSSSSPSSSG SAQSGENNVY SRSYGSSR

Best Arabidopsis Sequence Match ( AT5G56340.1 )
(BLAST)

001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR

Arabidopsis Description

ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.