Factsheet for Bra028173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74533	Canola	cytosol	89.85	100.0
AT1G60360.1	Thale cress	nucleus	76.92	76.45
VIT_18s0001g03270.t01	Wine grape	nucleus	45.54	44.44
PGSC0003DMT400002370	Potato	cytosol	43.38	43.65
Solyc11g012950.1.1	Tomato	cytosol	43.38	42.34
KRH64713	Soybean	nucleus	42.46	39.2
GSMUA_Achr7P13060_001	Banana	mitochondrion	29.23	38.62
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	31.38	31.97
TraesCS7D01G170800.1	Wheat	mitochondrion	31.38	31.88
HORVU0Hr1G019650.1	Barley	mitochondrion	30.77	31.55
TraesCS6D01G309800.1	Wheat	mitochondrion	30.77	31.45
TraesCS7B01G074800.1	Wheat	mitochondrion	31.08	31.37
Os02t0767600-00	Rice	mitochondrion	31.38	31.1
TraesCS6A01G330700.1	Wheat	mitochondrion	30.77	30.67
Zm00001d018190_P001	Maize	mitochondrion	31.38	30.63
EER89401	Sorghum	mitochondrion, nucleus	31.38	30.54
Zm00001d052154_P001	Maize	mitochondrion	29.54	30.19
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	30.77	30.03
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	31.38	30.0
TraesCS6B01G361600.1	Wheat	mitochondrion	30.77	29.67
Bra014684.1-P	Field mustard	nucleus	16.62	28.12
KXG31176	Sorghum	plastid	30.77	28.09
Bra007253.1-P	Field mustard	mitochondrion, nucleus	26.15	27.42
Bra001767.1-P	Field mustard	nucleus	17.54	26.64
Bra004589.1-P	Field mustard	nucleus	19.69	26.23
Bra000207.1-P	Field mustard	mitochondrion, nucleus	24.31	24.92
Bra038246.1-P	Field mustard	nucleus	24.62	24.62
Bra005020.1-P	Field mustard	nucleus, plastid	24.62	23.46
Bra000143.1-P	Field mustard	nucleus	25.85	22.4
Bra035835.1-P	Field mustard	nucleus	21.54	21.41
Bra002559.1-P	Field mustard	plastid	25.85	21.16
Bra030136.1-P	Field mustard	cytosol	15.69	21.07
Bra037999.1-P	Field mustard	nucleus	18.77	21.03
Bra002823.1-P	Field mustard	nucleus	22.77	21.02
Bra006709.1-P	Field mustard	plastid	25.23	20.87
Bra020313.1-P	Field mustard	plastid	24.92	20.82
Bra027436.1-P	Field mustard	nucleus	19.69	20.71
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.38	20.38
Bra030854.1-P	Field mustard	nucleus	19.38	20.19
Bra037109.1-P	Field mustard	nucleus	20.62	20.06
Bra019109.1-P	Field mustard	nucleus	19.38	19.57
Bra037800.1-P	Field mustard	cytosol	17.54	18.87
Bra026444.1-P	Field mustard	nucleus	20.62	18.06
Bra011215.1-P	Field mustard	cytosol	12.31	17.24
Bra008671.1-P	Field mustard	nucleus	12.62	14.29
Bra014266.1-P	Field mustard	nucleus	18.46	13.61
Bra005970.1-P	Field mustard	cytosol	11.69	13.1
Bra028935.1-P	Field mustard	nucleus	21.85	12.5
Bra021467.1-P	Field mustard	nucleus	14.46	12.05
Bra013006.1-P	Field mustard	nucleus	15.08	11.75
Bra009323.1-P	Field mustard	cytosol	13.23	11.35
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	13.85	11.34

Protein Annotations

EnsemblPlants:Bra028173.1	EnsemblPlants:Bra028173.1-P	EnsemblPlantsGene:Bra028173	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025445AB	UniProt:M4EHA8
MapMan:35.1	:	:	:	:	:

Description

AT1G60360 (E=9e-132) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:-:6376227..6377204

Molecular Weight (calculated)

37118.1 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.790

Length

325 amino acids

Sequence
(BLAST)

001: MSLSVPIRRT DGAPNGAFRT FGLYWCYHCH RTVRIASSNP LEIACPRCLR QFVVEIEMRR PRVTFTHAAP PLDASPETRL LEALSLMFDP PIIGRFGEDP
101: FLRARSRNVE HEPTTPLPHH RRRHSLDNDN DGGLPPPRRT YVILRPTDPT SPLGNRIEPA PPRRMNPRDF FTGGSGLEQL IEQLTQDDRP GPPPAPEPTI
201: DALPTVTITS KHLTNDTSQC TVCMEDFVPG GEATELPCKH IYHKNCITPW LRLHNSCPIC RRDLPPPVNN TVTDSQERSD STREEVPERR RPRWMQFWNM
301: GPSRARYQRV SPEETAHRNT RGNRS

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.