Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018190_P001 | Maize | mitochondrion | 81.45 | 77.78 |
| KXG31176 | Sorghum | plastid | 86.16 | 76.97 |
| Os02t0767600-00 | Rice | mitochondrion | 70.44 | 68.29 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 67.3 | 67.3 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 67.3 | 65.64 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 65.41 | 62.46 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 66.04 | 62.31 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 44.03 | 56.91 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.69 | 46.47 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 27.67 | 33.72 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 34.91 | 33.33 |
| CDX74533 | Canola | cytosol | 30.19 | 32.88 |
| Solyc11g012950.1.1 | Tomato | cytosol | 34.28 | 32.73 |
| PGSC0003DMT400002370 | Potato | cytosol | 33.02 | 32.51 |
| KRH64713 | Soybean | nucleus | 33.96 | 30.68 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.19 | 29.54 |
| CDY01669 | Canola | plastid | 29.87 | 29.41 |
| AT1G60360.1 | Thale cress | nucleus | 29.56 | 28.75 |
| Zm00001d047476_P001 | Maize | mitochondrion | 25.79 | 28.08 |
| Zm00001d045625_P001 | Maize | cytosol | 25.79 | 26.45 |
| PGSC0003DMT400061055 | Potato | extracellular | 23.9 | 25.5 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 23.9 | 25.33 |
| KRH10441 | Soybean | mitochondrion | 24.84 | 24.61 |
| Zm00001d047824_P001 | Maize | plastid | 21.38 | 24.46 |
| Zm00001d028590_P001 | Maize | plastid | 21.38 | 24.46 |
| KRH44018 | Soybean | mitochondrion | 24.21 | 24.29 |
| Zm00001d035677_P001 | Maize | plastid | 25.47 | 23.28 |
| Zm00001d043183_P001 | Maize | plastid | 23.58 | 23.08 |
| Zm00001d011076_P001 | Maize | plastid | 26.42 | 21.71 |
| Zm00001d012564_P001 | Maize | mitochondrion | 23.58 | 21.68 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 25.79 | 21.3 |
| Zm00001d032646_P001 | Maize | cytosol | 24.53 | 20.8 |
| Zm00001d008237_P001 | Maize | nucleus | 22.64 | 20.63 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 29.25 | 20.62 |
| Zm00001d040445_P001 | Maize | nucleus | 22.33 | 20.52 |
| Zm00001d047560_P001 | Maize | cytosol | 19.81 | 20.39 |
| Zm00001d010635_P001 | Maize | nucleus | 19.18 | 19.55 |
| Zm00001d038528_P001 | Maize | cytosol | 19.5 | 18.62 |
| Zm00001d013005_P002 | Maize | nucleus | 20.75 | 17.79 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 15.09 | 16.61 |
| Zm00001d046663_P001 | Maize | cytosol | 14.78 | 15.77 |
| Zm00001d051736_P001 | Maize | cytosol | 15.72 | 15.15 |
| Zm00001d053704_P001 | Maize | cytosol | 14.15 | 12.64 |
Protein Annotations
| EnsemblPlants:Zm00001d052154_P001 | EnsemblPlants:Zm00001d052154_T001 | EnsemblPlantsGene:Zm00001d052154 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF3 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:AQK56358.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000220E0BF |
| UniProt:K7U5N0 | MapMan:35.1 | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr4:-:181429730..181431252
Molecular Weight (calculated)
35245.6 Da
IEP (calculated)
8.806
GRAVY (calculated)
-0.636
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSATPAPAR HRTCRTYWCY QCGRALRIIS CPSTDVFCPR CFGRFLHEVD PPTARHGFPP AHFLPHPFHP QHQYAGRPRR WVIYGEEPTT VPGRAFRQPA
101: PAQGPATPPA PAPALVRRRR VPSPPPAPVP RRPSTPPAID PGDYFMGPNL NSLIEELTQN DRPGPAPAPP SAIDSLPTVR VAGAHLSDGS QCPVCKEDFE
201: LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRYQLPRAG SNGSSQAAPR GGSNGSNNRN REMEREPLTM VQWGPFSWPF PPRGMDDPGD AWEHGQRGRH
301: DAADAGAFYA WWRSLFFI
101: PAQGPATPPA PAPALVRRRR VPSPPPAPVP RRPSTPPAID PGDYFMGPNL NSLIEELTQN DRPGPAPAPP SAIDSLPTVR VAGAHLSDGS QCPVCKEDFE
201: LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRYQLPRAG SNGSSQAAPR GGSNGSNNRN REMEREPLTM VQWGPFSWPF PPRGMDDPGD AWEHGQRGRH
301: DAADAGAFYA WWRSLFFI
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.