Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 52.33 | 90.42 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 19.07 | 34.96 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 22.84 | 30.93 |
| PGSC0003DMT400061055 | Potato | extracellular | 19.73 | 29.87 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 22.17 | 29.41 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 20.62 | 29.34 |
| Zm00001d052154_P001 | Maize | mitochondrion | 20.62 | 29.25 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 20.84 | 29.19 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 20.62 | 29.15 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 20.62 | 29.06 |
| KRH44018 | Soybean | mitochondrion | 20.4 | 29.02 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 19.29 | 29.0 |
| Os02t0767600-00 | Rice | mitochondrion | 21.06 | 28.96 |
| Zm00001d018190_P001 | Maize | mitochondrion | 21.29 | 28.83 |
| KRH10441 | Soybean | mitochondrion | 20.18 | 28.35 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 19.73 | 28.34 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 19.96 | 28.3 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 20.18 | 27.91 |
| EER89401 | Sorghum | mitochondrion, nucleus | 20.62 | 27.84 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 20.18 | 27.33 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 19.73 | 26.41 |
| KXG31176 | Sorghum | plastid | 20.62 | 26.12 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 19.07 | 25.6 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 19.73 | 23.06 |
| VIT_17s0000g08400.t01 | Wine grape | nucleus | 7.1 | 22.38 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 17.07 | 20.87 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 15.74 | 19.29 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 13.75 | 18.56 |
| VIT_08s0007g00720.t01 | Wine grape | plastid | 16.19 | 14.15 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 11.31 | 13.04 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 11.09 | 11.39 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 14.86 | 11.36 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CBI23845 | ProteinID:CBI23845.3 | UniProt:D7T016 | EMBL:FN595497 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44290 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0001BE2316 | ArrayExpress:VIT_12s0034g01390 | EnsemblPlantsGene:VIT_12s0034g01390 | EnsemblPlants:VIT_12s0034g01390.t01 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:+:17398801..17400234
Molecular Weight (calculated)
52259.2 Da
IEP (calculated)
7.965
GRAVY (calculated)
-0.239
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDRRPRII VHHGTRRMRS YHYYWCQHCQ RTVRIASGIL SEILLCPFCS CRLQYEFHAP RLRLVPTFTG LGVLAAELLE DVDVSLLPRR RQNTDLNGVL
101: WGSEMRIPSI NVPSGVGRHL LTPPRPGRPV AAPENVAVPR LDGSNFAIRD VLNEEMEELT HNEVTGENTQ DDRPGPPPAA PSAIEALPSV RLTPTHLRND
201: PCCPVCKEEY RAGEEVREMP CNHLYHSDCI VPWLRIHNSC PVCRYELQAS PNPHAVHNTR AENFDVEEVT NRLVWPWNQW FSMWPFRSLP NWRYPDGLDF
301: HYNRRGGETQ NHAFFFLIFL KIMKDFKFLC KQNPLYLLTN NELKCAVSCS WHLVAFLAHS IACICMLQQH SPCGEAAYNI SFMIELFLRQ VSIYIQYMLI
401: SRLLWWKDVE DSQLGFIRGQ CTVLEAPNYP EVFFLLSFKV FNIKKKKKNV V
101: WGSEMRIPSI NVPSGVGRHL LTPPRPGRPV AAPENVAVPR LDGSNFAIRD VLNEEMEELT HNEVTGENTQ DDRPGPPPAA PSAIEALPSV RLTPTHLRND
201: PCCPVCKEEY RAGEEVREMP CNHLYHSDCI VPWLRIHNSC PVCRYELQAS PNPHAVHNTR AENFDVEEVT NRLVWPWNQW FSMWPFRSLP NWRYPDGLDF
301: HYNRRGGETQ NHAFFFLIFL KIMKDFKFLC KQNPLYLLTN NELKCAVSCS WHLVAFLAHS IACICMLQQH SPCGEAAYNI SFMIELFLRQ VSIYIQYMLI
401: SRLLWWKDVE DSQLGFIRGQ CTVLEAPNYP EVFFLLSFKV FNIKKKKKNV V
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.