Factsheet for VIT_18s0001g14530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0875g00010.t01
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	VIT_12s0059g01420.t01	AT2G32950.1	10488108
AT5G64920.1	VIT_12s0059g01420.t01	AT2G32950.1	12028569
AT5G64920.1	VIT_12s0059g01420.t01	AT2G32950.1	12827204
AT5G64920.1	VIT_00s0875g00010.t01	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36150	Soybean	nucleus	54.49	54.65
KRG90607	Soybean	nucleus	55.09	54.6
Solyc09g074460.1.1	Tomato	nucleus	55.39	49.07
PGSC0003DMT400081469	Potato	nucleus	55.39	48.94
AT5G64920.1	Thale cress	cytosol	47.01	47.01
CDX81263	Canola	cytosol, peroxisome, plastid	40.72	46.9
CDY18690	Canola	cytosol, peroxisome, plastid	41.92	46.82
Bra037800.1-P	Field mustard	cytosol	41.62	46.03
CDY32333	Canola	cytosol	26.05	37.02
CDX94665	Canola	nucleus	25.45	36.17
Bra030136.1-P	Field mustard	cytosol	25.75	35.54
CDY68603	Canola	cytosol	25.75	35.54
VIT_08s0040g00590.t01	Wine grape	nucleus	21.26	22.61
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	17.66	22.61
VIT_06s0004g00120.t01	Wine grape	nucleus	24.55	22.28
VIT_18s0001g03270.t01	Wine grape	nucleus	21.26	21.32
VIT_06s0009g02350.t01	Wine grape	mitochondrion	21.26	21.13
VIT_17s0053g00320.t01	Wine grape	plastid	23.05	20.87
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	22.46	19.43
VIT_17s0000g08400.t01	Wine grape	nucleus	7.49	17.48
VIT_14s0083g00710.t01	Wine grape	nucleus	20.36	17.39
VIT_17s0000g04730.t01	Wine grape	nucleus	21.86	16.63
VIT_08s0007g00720.t01	Wine grape	plastid	22.16	14.34
VIT_08s0056g00320.t01	Wine grape	mitochondrion	24.55	13.9
VIT_12s0034g01390.t01	Wine grape	mitochondrion	18.56	13.75

Protein Annotations

EntrezGene:100250690	wikigene:100250690	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A5BX64	EMBL:AM474392
ProteinID:CAN66109	ProteinID:CAN66109.1	ProteinID:CCB46046	ProteinID:CCB46046.1	ncoils:Coil	EMBL:FN595227
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100250690	wikigene:LOC100250690	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC59845	UniParc:UPI0001521D85
ArrayExpress:VIT_18s0001g14530	EnsemblPlantsGene:VIT_18s0001g14530	EnsemblPlants:VIT_18s0001g14530.t01	unigene:Vvi.3303	RefSeq:XP_002273623	RefSeq:XP_002273623.1
RefSeq:XP_003634390	RefSeq:XP_003634390.1	RefSeq:XP_010664832.1	RefSeq:XP_010664833.1	RefSeq:XP_010664834.1	RefSeq:XP_010664835.1
RefSeq:XP_010664836.1	RefSeq:XP_010664837.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:12533609..12536412

Molecular Weight (calculated)

37206.3 Da

IEP (calculated)

4.085

GRAVY (calculated)

-0.812

Length

334 amino acids

Sequence
(BLAST)

001: MDESPIQSDT LHYWCYQCDK HVSIETLPDL PDVICNECKT GFVETIGVAP TAPEPRNADQ IDERSLVYAF TRRLRHIAQP PSDDEDPPSL PPDHASEDDF
101: LRIDLDGWDN DEDEDVSEND GEGEEQEEEE DRSDNENEGN VYRPEIDRDH LRRRREMLRR RIHNLAAASG NPNAVLDWAI LMASEDSTIE FHFQMPEPEG
201: YTGNPEDYVD AAGYEELLQN LAESDGAARR GAPPASKSAI SALPSVEIKS EEQVLACAIC KDVVSICEIA RKLPCGHGYH GDCIVPWLNS RNSCPVCRFE
301: LPTDDSEYEE ERKKRLVPTS GGASGSGGEN SDSG

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.