Factsheet for VIT_06s0009g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00590.t01	Wine grape	nucleus	58.93	63.06
PGSC0003DMT400058464	Potato	nucleus	51.79	54.72
Os03t0351800-01	Rice	nucleus	45.83	54.42
Solyc01g009000.2.1	Tomato	plastid	51.49	54.4
Bra004589.1-P	Field mustard	nucleus	38.99	53.69
EER92269	Sorghum	nucleus	45.24	53.33
GSMUA_AchrUn_...	Banana	nucleus	40.77	53.1
Bra000207.1-P	Field mustard	mitochondrion, nucleus	50.0	53.0
CDY35437	Canola	mitochondrion, nucleus	50.0	53.0
TraesCS3A01G440000.1	Wheat	mitochondrion	45.24	52.6
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	40.48	52.51
GSMUA_Achr8P09890_001	Banana	nucleus	36.01	52.38
TraesCS3D01G432800.1	Wheat	mitochondrion	44.94	52.25
CDY22483	Canola	mitochondrion	47.02	52.15
TraesCS3B01G474100.1	Wheat	mitochondrion	44.64	52.08
Zm00001d047476_P001	Maize	mitochondrion	44.94	51.71
CDX79968	Canola	mitochondrion, nucleus	45.24	51.18
HORVU3Hr1G096110.1	Barley	mitochondrion	43.75	50.87
CDY23878	Canola	mitochondrion, nucleus	46.13	50.82
AT2G40830.4	Thale cress	mitochondrion	49.11	50.3
CDX75998	Canola	nucleus	27.68	48.44
Bra014684.1-P	Field mustard	nucleus	27.68	48.44
AT3G56580.1	Thale cress	mitochondrion	44.94	47.19
Bra007253.1-P	Field mustard	mitochondrion, nucleus	42.26	45.81
CDY27204	Canola	mitochondrion, nucleus	42.26	45.51
CDX72127	Canola	mitochondrion	42.26	44.94
GSMUA_Achr11P...	Banana	mitochondrion	38.69	43.48
CDX94901	Canola	cytosol	37.5	40.13
VIT_18s0001g03270.t01	Wine grape	nucleus	29.17	29.43
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	21.73	27.97
VIT_17s0053g00320.t01	Wine grape	plastid	28.87	26.29
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	28.27	24.61
VIT_17s0000g08400.t01	Wine grape	nucleus	10.12	23.78
VIT_06s0004g00120.t01	Wine grape	nucleus	24.7	22.55
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	21.13	21.26
VIT_12s0034g01390.t01	Wine grape	mitochondrion	25.6	19.07
VIT_08s0007g00720.t01	Wine grape	plastid	25.0	16.28
VIT_14s0083g00710.t01	Wine grape	nucleus	16.07	13.81
VIT_17s0000g04730.t01	Wine grape	nucleus	17.26	13.21
VIT_08s0056g00320.t01	Wine grape	mitochondrion	21.73	12.37

Protein Annotations

EntrezGene:100251284	wikigene:100251284	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM423760	ProteinID:CAN73309
ProteinID:CAN73309.1	ProteinID:CCB49109	ProteinID:CCB49109.1	UniProt:F6HAD8	EMBL:FN595504	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100251284	wikigene:LOC100251284	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF5	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001983621
ArrayExpress:VIT_06s0009g02350	EnsemblPlantsGene:VIT_06s0009g02350	EnsemblPlants:VIT_06s0009g02350.t01	unigene:Vvi.670	RefSeq:XP_002266870	RefSeq:XP_002266870.1
RefSeq:XP_010651556.1	RefSeq:XP_010651557.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:14742953..14747814

Molecular Weight (calculated)

36991.7 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.767

Length

336 amino acids

Sequence
(BLAST)

001: MSTGGNTHWC YQCRRRVRLQ GRDTVCSYCY GGFIQELNDL EGLVPEAFLG SQNSEDNHGQ MSSIFDAFNG LVRQGNADQR FGLVNAVNDF MRQRMAGRNP
101: NFDVRVRSGL VPEDNSMSGY RSGPWLVFHG QIPVEALFSG GTGRGGNVGD LFLGPGLEEL IEQLTMNDRR GPPPATRSSI DAMPTIKITQ RHLRSDSHCP
201: VCKDKFELGS EARQMPCDHI YHSDCIVPWL VQHNSCPVCR QELPPQVSGN VRGQQSSNGG NRSSRSENRS SSNGSSASGS ENGGQSQGRR NLFSSLWPFG
301: SSNPNAHHYD ETGGSSSRTP HGENHEMDYS GWPSDY

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.