Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75998 | Canola | nucleus | 48.73 | 79.69 |
| CDX72127 | Canola | mitochondrion | 64.33 | 63.92 |
| CDY27204 | Canola | mitochondrion, nucleus | 63.06 | 63.46 |
| AT3G56580.1 | Thale cress | mitochondrion | 62.74 | 61.56 |
| CDY35437 | Canola | mitochondrion, nucleus | 53.18 | 52.68 |
| CDY23878 | Canola | mitochondrion, nucleus | 50.96 | 52.46 |
| CDX79968 | Canola | mitochondrion, nucleus | 48.73 | 51.52 |
| CDY22483 | Canola | mitochondrion | 49.04 | 50.83 |
| KRH71659 | Soybean | nucleus | 42.99 | 43.69 |
| KRH33121 | Soybean | nucleus | 42.04 | 42.72 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 41.08 | 41.08 |
| EER92269 | Sorghum | nucleus | 36.94 | 40.7 |
| Os03t0351800-01 | Rice | nucleus | 36.62 | 40.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.8 | 39.92 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 29.3 | 39.83 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 35.67 | 38.75 |
| Zm00001d047476_P001 | Maize | mitochondrion | 35.99 | 38.7 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 35.35 | 38.41 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 35.35 | 38.41 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 35.03 | 38.19 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 31.21 | 37.84 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 40.13 | 37.5 |
| KRH14643 | Soybean | nucleus | 40.13 | 37.5 |
| KRH18631 | Soybean | nucleus | 36.31 | 37.25 |
| Solyc01g009000.2.1 | Tomato | plastid | 36.94 | 36.48 |
| PGSC0003DMT400058464 | Potato | nucleus | 36.62 | 36.16 |
| PGSC0003DMT400079301 | Potato | nucleus | 31.85 | 33.33 |
| Solyc08g075910.1.1 | Tomato | nucleus | 31.85 | 33.22 |
| CDY72364 | Canola | cytosol | 23.25 | 32.88 |
| CDX82271 | Canola | cytosol | 22.29 | 32.86 |
| CDY36069 | Canola | cytosol | 22.61 | 32.72 |
| KRH73496 | Soybean | mitochondrion | 36.62 | 31.0 |
| KRH18634 | Soybean | nucleus | 22.29 | 29.66 |
| GSMUA_Achr11P... | Banana | mitochondrion | 27.39 | 28.76 |
| CDY22790 | Canola | nucleus | 21.97 | 25.56 |
| CDY46577 | Canola | nucleus | 22.61 | 24.4 |
| CDY33437 | Canola | cytosol | 24.84 | 24.07 |
| CDY24592 | Canola | nucleus | 24.52 | 23.99 |
| CDX74533 | Canola | cytosol | 22.29 | 23.97 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 23.57 | 22.91 |
| CDY42507 | Canola | cytosol | 24.52 | 22.71 |
| CDY01669 | Canola | plastid | 22.29 | 21.67 |
| CDX92768 | Canola | nucleus | 20.7 | 21.04 |
| CDY32791 | Canola | nucleus | 23.25 | 20.74 |
| CDY20473 | Canola | nucleus, plastid | 21.97 | 20.66 |
| CDY56081 | Canola | nucleus | 15.29 | 20.08 |
| CDY26096 | Canola | nucleus | 18.79 | 20.07 |
| CDX92770 | Canola | nucleus | 20.7 | 20.06 |
| CDX74839 | Canola | cytosol, plastid | 20.7 | 20.06 |
| CDX80258 | Canola | plastid | 22.61 | 20.0 |
| CDY53450 | Canola | cytosol | 20.38 | 19.88 |
| CDY24951 | Canola | nucleus | 23.57 | 19.73 |
| CDY42740 | Canola | nucleus | 20.06 | 19.57 |
| CDY07641 | Canola | nucleus | 23.25 | 19.52 |
| CDY10554 | Canola | cytosol | 18.79 | 19.34 |
| CDX94665 | Canola | nucleus | 14.33 | 19.15 |
| CDY68603 | Canola | cytosol | 14.65 | 19.01 |
| CDY56022 | Canola | nucleus | 18.79 | 18.85 |
| CDY32333 | Canola | cytosol | 14.01 | 18.72 |
| CDY48679 | Canola | cytosol, plastid | 19.75 | 18.56 |
| CDY61251 | Canola | cytosol | 21.34 | 18.56 |
| CDX89343 | Canola | cytosol, mitochondrion | 20.7 | 18.47 |
| CDY50031 | Canola | cytosol | 16.88 | 18.28 |
| CDY08249 | Canola | cytosol | 19.11 | 17.91 |
| CDY33046 | Canola | plastid | 19.43 | 17.84 |
| CDY43991 | Canola | nucleus | 17.52 | 17.8 |
| CDY28208 | Canola | cytosol | 13.06 | 17.67 |
| CDY56080 | Canola | cytosol | 15.92 | 17.61 |
| CDX94342 | Canola | mitochondrion, nucleus | 21.66 | 17.57 |
| CDX88709 | Canola | cytosol, plastid | 21.97 | 17.51 |
| CDX99105 | Canola | cytosol, plastid | 17.52 | 16.98 |
| CDY01221 | Canola | cytosol | 11.46 | 16.51 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 14.65 | 15.86 |
| CDY69134 | Canola | cytosol | 14.65 | 15.81 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 14.65 | 15.38 |
| CDX78323 | Canola | cytosol | 14.01 | 15.28 |
| CDY58938 | Canola | nucleus | 21.34 | 15.19 |
| CDY03622 | Canola | nucleus | 21.34 | 15.02 |
| CDX69973 | Canola | cytosol | 16.88 | 14.72 |
| CDY21513 | Canola | cytosol | 16.56 | 14.61 |
| CDX85531 | Canola | cytosol | 15.29 | 13.99 |
| CDX90972 | Canola | cytosol | 14.65 | 13.73 |
| CDX69496 | Canola | cytosol | 12.42 | 13.54 |
| CDY51628 | Canola | peroxisome | 17.2 | 13.3 |
| CDY02194 | Canola | peroxisome | 16.56 | 13.07 |
| CDY34721 | Canola | cytosol | 15.61 | 12.56 |
| CDY34722 | Canola | cytosol | 15.61 | 12.56 |
| CDY26465 | Canola | cytosol | 13.06 | 12.09 |
| CDY11934 | Canola | nucleus | 22.61 | 10.89 |
| CDY23599 | Canola | golgi, mitochondrion | 17.52 | 9.03 |
Protein Annotations
| EnsemblPlants:CDX94901 | EnsemblPlantsGene:GSBRNA2T00100364001 | Gene3D:3.30.40.10 | GO:A0A078E0C6 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX94901 | ProteinID:CDX94901.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE0D3F |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g07700D
Coordinates
chrLK031886:-:36118..40586
Molecular Weight (calculated)
35277.8 Da
IEP (calculated)
8.007
GRAVY (calculated)
-0.782
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRYMRGGSE RLEERKESPD EIGVVYCDGC GRIWTRWLTV NILSLEWDGE ILLPGSLSFS SSSSSSSNVK SHHIFSRGIL SSFSDPCERK RSYDRESFSS
101: IAPFLIFGGQ ANNHTAVEAL INGSPAIGIT RGNNTNAGDY FYGPGLEELI EQLSSGISHH RGPPPAAKSS IDALPTIKIT QKHLKSSDSH CPVCKEEFEL
201: KSEAKQMPCK HVYHSDCIVP WLVQHNTCPV CRKELPSRGS SSSTQSDQNR STSRRRNPFS SLWPFRSSSA SSTQNRRDTN NKANTEEGQY THHHHHQHQQ
301: QQSNMGYSGW PFDY
101: IAPFLIFGGQ ANNHTAVEAL INGSPAIGIT RGNNTNAGDY FYGPGLEELI EQLSSGISHH RGPPPAAKSS IDALPTIKIT QKHLKSSDSH CPVCKEEFEL
201: KSEAKQMPCK HVYHSDCIVP WLVQHNTCPV CRKELPSRGS SSSTQSDQNR STSRRRNPFS SLWPFRSSSA SSTQNRRDTN NKANTEEGQY THHHHHQHQQ
301: QQSNMGYSGW PFDY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.